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Figure 3 | BMC Bioinformatics

Figure 3

From: MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes

Figure 3

The output of the query for the human MCM5 gene. The output was edited to highlight the E2F binding sites discussed in the text. The hit alignment window shows the match between the sequence at positions +2 to +12 from the transcript start and model T05206. The set of hits can be sorted by position, name or accession number of the factor. The position of the hits can be displayed with respect to the start of the transcript, the ATG or as absolute coordinates on the chromosome. The page can display the list of common factors that bind to the same selected region in the homologs included in the analysis, the factors on the list that are known to physically interact or the different classes to which they belong. In addition, the hits occurring in evolutionarily conserved regions can be highlighted.

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