Table 2 Comparing the number of features observed together within the same genomic space against Monte Carlo stochastic placement simulations. The first 10 MB from chromosomes 3, 5, 13 and 18 were used for analysis and the averages shown above.
From: Automating Genomic Data Mining via a Sequence-based Matrix Format and Associative Rule Set
Feature Comparison | Avg. # of coincident features (c) | Avg. # of coincident features in MC simulation | Average MC / c |
|---|---|---|---|
CpGs vs. Repeats | 676 | 580 | 1.26 ± 0.35 |
CpGs vs. Genes | 670 | 550 | 1.24 ± 0.18 |
CpGs vs. Exons | 167 | 59 | 3.08 ± 1.38 |
Repeats vs. Genes | 2698 | 2600 | 1.03 ± 0.05 |
Repeats vs. Exons | 43 | 111 | 0.38 ± 0.03 |
Genes vs. Exons | 502 | 171 | 3.02 ± 0.60 |