CARMA: A platform for analyzing microarray datasets that incorporate replicate measures

BMC Bioinformatics

Table 1 Comparison of background and transformation techniques

Number of Genes	Background Subtracted LinlogTransformed	Background Subtracted Log2 Transformed	Non-Background Subtracted Log2 Transformed	Non-Background Subtracted Linlog Transformed
10	778	375	565	565
100	3091	1464	2087	2087
1000	7084	3565	5019	5019

The sum of the gene Variety term ANOVA F values for the first 10, 100, or 1000 genes ranked by Variety term ANOVA F value. Larger numbers represent higher ratios of the between mouse variance over the within mouse variance.

ISSN: 1471-2105