From: GEM System: automatic prototyping of cell-wide metabolic pathway models from genomes
species | genes | metabolites | reactions | enzymes | KEGG coverage |
---|---|---|---|---|---|
Bacillus anthracis Ames | 5311 | 1007 | 776 | 675 | 423/ 457(92.56%) |
Bordetella bronchiseptica RB50 | 4994 | 1038 | 788 | 669 | 429/ 460(93.26%) |
Bacillus halodurans C-125 | 4066 | 1056 | 812 | 693 | 422/ 435(97.01%) |
Bradyrhizobium japonicum USDA110 | 8317 | 1257 | 995 | 863 | 521/ 555(93.87%) |
Bordetella parapertussis 12822 | 4185 | 1011 | 763 | 644 | 404/ 433(93.30%) |
Bordetella pertussis Tohama I | 3447 | 957 | 717 | 602 | 394/ 422(93.36%) |
Bacillus subtilis 168 | 4106 | 1060 | 818 | 699 | 464/ 476(97.48%) |
Bacteroides thetaiotaomicron VPI-5482 | 4778 | 912 | 696 | 583 | 361/ 379(95.25%) |
Caulobacter crescentus CB15 | 3737 | 1068 | 807 | 689 | 405/ 420(96.43%) |
Corynebacterium efficiens YS-314 | 2950 | 944 | 674 | 574 | 352/ 383(91.91%) |
Chromobacterium violaceum ATCC 12472 | 4407 | 1047 | 834 | 729 | 484/ 523(92.54%) |
Escherichia coli CFT073 | 5379 | 1120 | 906 | 780 | 525/ 554(94.77%) |
Escherichia coli O157:H7 EDL933 | 5349 | 1197 | 972 | 842 | 545/ 566(96.29%) |
Escherichia coli K-12 MG1655 | 4289 | 1195 | 968 | 835 | 579/ 579(100.00%) |
Escherichia coli O157:H7 Sakai | 5361 | 1206 | 972 | 842 | 548/ 568(96.48%) |
Fusobacterium nucleatum ATCC 25586 | 2067 | 804 | 608 | 514 | 302/ 326(92.64%) |
Gloeobacter violaceus PCC7421 | 4430 | 945 | 689 | 587 | 347/ 375(92.53%) |
Haemophilus influenzae Rd KW20 | 1709 | 907 | 664 | 551 | 358/ 359(99.72%) |
Lactococcus lactis subsp. lactis IL1403 | 2266 | 925 | 683 | 567 | 312/ 328(95.12%) |
Mycobacterium bovis subsp. bovis AF2122/97 | 3920 | 943 | 690 | 592 | 414/ 456(90.79%) |
Mycobacterium leprae TN | 1605 | 851 | 605 | 501 | 285/ 315(90.48%) |
Mycobacterium tuberculosis CDC1551 | 4187 | 1064 | 780 | 678 | 403/ 424(95.05%) |
Mycobacterium tuberculosis H37Rv | 3869 | 1070 | 806 | 684 | 405/ 431(93.97%) |
Nitrosomonas europaea ATCC 19718 | 2461 | 832 | 621 | 514 | 334/ 360(92.78%) |
Neisseria meningitidis Z2491 (serogroup A) | 2065 | 895 | 663 | 562 | 334/ 346(96.53%) |
Neisseria meningitidis MC58 (serogroup B) | 2025 | 867 | 635 | 532 | 329/ 339(97.05%) |
Oceanobacillus iheyensis HTE831 | 3496 | 967 | 731 | 617 | 398/ 435(91.49%) |
Pseudomonas aeruginosa PA01 | 5565 | 1218 | 944 | 826 | 499/ 517(96.52%) |
Photorhabdus luminescens | 4683 | 1026 | 785 | 672 | 458/ 501(91.42%) |
Pasteurella multocida PM70 | 2014 | 913 | 671 | 561 | 372/ 391(95.14%) |
Pseudomonas putida KT2440 | 5350 | 1087 | 840 | 722 | 456/ 492(92.68%) |
Pseudomonas syringae pv. tomato DC3000 | 5471 | 1077 | 841 | 719 | 446/ 483(92.34%) |
Rhodopirellula baltica (Pirellula sp. strain 1) | 7325 | 971 | 748 | 639 | 412/ 432(95.37%) |
Staphylococcus aureus MW2 | 2632 | 866 | 634 | 541 | 343/ 360(95.28%) |
Staphylococcus epidermidis ATCC 12228 | 2419 | 843 | 612 | 514 | 328/ 350(93.71%) |
Shigella flexneri 301 (serotype 2a) | 4180 | 1084 | 858 | 736 | 493/ 532(92.67%) |
Shigella flexneri 2457T (serotype 2a) | 4068 | 1044 | 817 | 701 | 486/ 533(91.18%) |
Salmonella typhi Ty2 | 4323 | 1100 | 887 | 764 | 527/ 563(93.61%) |
Synechococcus sp. WH 8102 | 2517 | 804 | 575 | 508 | 347/ 375(92.53%) |
Thermosynechococcus elongatus BP-1 | 2475 | 851 | 628 | 512 | 318/ 350(90.86%) |
Thermotoga maritima MSB8 | 1846 | 862 | 622 | 515 | 292/ 305(95.74%) |
Xanthomonas axonopodis pv. citri 306 | 4312 | 1054 | 804 | 679 | 424/ 451(94.01%) |
Xanthomonas campestris pv. ATCC 33913 | 4181 | 1051 | 809 | 685 | 437/ 462(94.59%) |
Yersinia pestis KIM | 4090 | 1075 | 846 | 723 | 472/498(94.78%) |