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Table 3 The independent test set of 26 transmembrane proteins with known three-dimensional structures. We list the PDB code, the name of the protein and the number of the transmembrane segments

From: Algorithms for incorporating prior topological information in HMMs: application to transmembrane proteins

PDB code

Name

Number of transmembrane segments

1RC2:B

AQUAPORIN Z

6

1J4N:A

AQUAPORIN 1

6

1IWG:A

MULTIDRUG EFFLUX TRANSPORTER ACRB

12

1NEK:C

SUCCINATE DEHYDROGENASE CYTOCHROME B-556 SUBUNIT

3

1NEK:D

SUCCINATE_DEHYDROGENASE HYDROPHOBIC MEMBRANE ANCHOR PROTEIN

3

1Q16:C

RESPIRATORY NITRATE REDUCTASE 1 GAMMA CHAIN

5

1RH5:B

PREPROTEIN TRANSLOCASE SECE SUBUNIT

1

1RH5:C

PREPROTEIN TRANSLOCASE SECBETA SUBUNIT

1

1IZL:A

PHOTOSYSTEM II SUBUNIT PSBA

5

1IZL:C

PHOTOSYSTEM II SUBUNIT PSBC

5

1YCE

ROTOR OF F-TYPE NA+-ATPASE

2

2BL2

ROTOR OF V-TYPE NA+-ATPASE

4

1XQF:A

PROBABLE AMMONIUM TRANSPORTER

11

1KPL:A

H+/CL- EXCHANGE TRANSPORTER

14

1S5L:B

PHOTOSYSTEM II CORE LIGHT HARVESTING PROTEIN

6

1S5L:C

PHOTOSYSTEM II CP43 PROTEIN

6

1S5L:D

PHOTOSYSTEM II REACTION CENTER D2 PROTEIN

5

1S5L:E

CYTOCHROME B559 ALPHA SUBUNIT

1

1FX8:A

GLPF GLYCEROL FACILITATOR CHANNEL

6

1LNQ:A

MTHK POTTASIUM CHANNEL, CA-GATED

2

1MXM:A

MECHANOSENSITIVE CHANNEL PROTEIN

3

1Q90:M

CYTOCHROME B6F COMPLEX SUBUNIT PETM

1

1VF5:C

CYTOCHROME F

1

1K4C:C

POTASSIUM CHANNEL KCSA

2

1ZCD:A

NA(+)/H(+) ANTIPORTER 1

12

2A79:B

POTASSIUM VOLTAGE-GATED CHANNEL SUBFAMILY A MEMBER 2

6

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BMC Bioinformatics

ISSN: 1471-2105

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