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Table 2 Selected significant motif combinations from AT genes up-regulated during senescence

From: XcisClique: analysis of regulatory bicliques

Biclique

Motifset

Geneset

p- value

Biclique 31

ELRECOREPCRP1, EVENINGAT, Fed-AtMyb4, GT1CONSENSUS, IBOX, MYCCONSENSUSAT, RAV1AAT, WBOXATNPR1

At1g14400, At1g47128, At1g59870, At1g68820, At2g25450, At2g26560, At3g09390, At4g39090, At5g10860

ℋ MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBamrtHrhAL1wy0L2yHvtyaeHbnfgDOvwBHrxAJfwnaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaWaaeGaeaaakeaaimaacqWFlecsaaa@3763@ tail = 4.30e – 06, pSAV(Shoots)= 8.70e-04

Biclique 3854

DPBFCOREDCDC3, Fed-AtMyb4, Fed-HBF, GT1CONSENSUS, MYCCONSENSUSAT

At1g21670, At1g47128, At1g53750, At1g78080, At3g12120, At4g27020, At5g60360

ℋ MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBamrtHrhAL1wy0L2yHvtyaeHbnfgDOvwBHrxAJfwnaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaWaaeGaeaaakeaaimaacqWFlecsaaa@3763@ tail = 4.88e – 02, psav(Shoots)= 3.54e-02

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BMC Bioinformatics

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