Figure 1From: A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomesA profile hidden Markov model as introduced by Krogh et al. [1]. Squares indicate match states (M i ), diamonds insert states (I i ) and circles delete states (D i ). Possible transitions are shown as arrows. Begin state (B), End state (E) and delete states (D i ) are silent states, i.e. they do not emit symbols of the alphabet.Back to article page