From: Improving the specificity of high-throughput ortholog prediction
Data setc | Probable ssd-ortholog | Orthology uncertainf | Probable paralog | ||||||
---|---|---|---|---|---|---|---|---|---|
Ratio Rangec | Proportion of introduced true-negatives in a true-negative analysisd | Proportion of RBH-predicted orthologse | Ratio Rangec | Proportion of introduced true-negatives in a true-negative analysisd | Proportion of RBH-predicted orthologse | Ratio Rangec | Proportion of introduced true-negatives in a true-negative analysisd | Proportion of RBH-predicted orthologse | |
rat-mouse comparison (human outgroup) | R1 ≤ 0.60 and R2 ≤ 0.55 | 0.8% | 76% | See footnotef | 16% | 14% | R1 > 0.80 or R2 > 0.80 | 77%d | 10% |
P. putida-P. syringae comparison (E. coli outgroup) | R1 ≤ 0.55 and R2 ≤ 0.70 | 1.3% | 91% | See footnotef | 24% | 4% | R1 > 0.75 and R2 > 0.85 | 87% | 5% |