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Table 2 Simulation of two palindromic TFBS. Simulation of two palindromic TFBS A and B. The first 2 columns are the complementary positions of the palindromic TFBS. The 3rd and 4th columns are simulation parameters, which specify the probabilities of forming a complementary base pair. The last 2 columns are the p-values of OMiMa's pairwise χ2 tests of position dependency for the simulated data.

From: Optimized mixed Markov models for motif identification

Position pair

Complementary Prob.

p-value

1st

2nd

A

B

A

B

0

11

0.99

0.90

4.88e-88

3.84e-63

1

10

0.95

0.85

6.62e-72

2.66e-56

2

9

0.90

0.75

3.84e-69

2.25e-35

3

8

0.65

0.65

1.44e-19

5.89e-24

4

7

0.50

0.50

2.00e-07

3.05e-03

5

6

0.25

0.25

3.35e-01

1.43e-01