Table 1 Genomes included in this study
From: Similarity-based gene detection: using COGs to find evolutionarily-conserved ORFs
Accessiona | Name | Length (nt) | # of genes annotateda | # of ORFsb >30 aa |
|---|---|---|---|---|
BA000004 | Bacillus halodurans strain C-125 | 4202352 | 4066 | 73839 |
BSXX | Bacillus subtilis subsp. subtilis str. 168 | 4214630 | 4106 | 75310 |
AE000783 | Borrelia burgdorferi str. B31 | 910724 | 850 | 10756 |
AE001273 | Chlamydia trachomatis strain D/UW-3/CX | 1042519 | 894 | 17211 |
AE001363 | Chlamydophila pneumoniae CWL029 | 1230230 | 1052 | 19259 |
AE001437 | Clostridium acetobutylicum strain ATCC 824 | 3940880 | 3672 | 48244 |
BA000016 | Clostridium perfringens str. 13 | 3031430 | 2660 | 31417 |
U00096 | Escherichia coli K12 | 4639221 | 4289 | 86919 |
AE005174 | Escherichia coli O157:H7 EDL933 | 5528970 | 5349 | 102747 |
L42023 | Haemophilus influenzae Rd KW20 | 1830138 | 1709 | 27756 |
AE001439 | Helicobacter pylori J99 | 1643831 | 1491 | 21997 |
AL591824 | Listeria monocytogenes | 2944528 | 2855 | 45146 |
AE015450 | Mycoplasma gallisepticum str. R | 996422 | 726 | 13506 |
L43967 | Mycoplasma genitalium strain G-37 | 580074 | 480 | 8058 |
AE017308 | Mycoplasma mobile strain 163K | 777079 | 633 | 10241 |
BX293980 | Mycoplasma mycoides subsp. mycoides SC | 1211703 | 1016 | 14127 |
BA000026 | Mycoplasma penetrans strain HF-2 | 1358633 | 1037 | 17111 |
U00089 | Mycoplasma pneumoniae strain M129 | 816394 | 688 | 13868 |
MPUABCTIP | Mycoplasma pulmonis (Sabin 1941) Freundt 1955 | 963879 | 782 | 13324 |
AE002098 | Neisseria meningitidis serogroup B strain MC58 | 2272351 | 2025 | 42660 |
AE004091 | Pseudomonas aeruginosa str. PAO1 | 6264403 | 5566 | 92461 |
RPXX | Rickettsia prowazekii da Rocha-Lima 1916 | 1111523 | 834 | 12029 |
STYPHCT18 | Salmonella enterica subsp. enterica serovar Typhi | 4809037 | 4600 | 90974 |
AE007317 | Streptococcus pneumoniae str. R6 | 2038615 | 2043 | 31733 |
AE000520 | Treponema pallidum subsp. pallidum str. Nichols | 1138011 | 1031 | 21937 |
AF222894 | Ureaplasma urealyticum biovar 2 | 751719 | 611 | 9173 |
AE003852 | Vibrio cholerae serotype O1 biotype ElTor strain N16961 | 2961149 | 2736 | 53378 |
AE003853 | Vibrio cholerae serotype O1 biotype ElTor strain N16961 | 1072315 | 1092 | 19506 |