Similarity-based gene detection: using COGs to find evolutionarily-conserved ORFs

Table 4 Minority-annotated mixed COGs of stringency 6

^aORF COG id	Organism	^bGenomic coordinates	Annotated locus tag	Explanation for similarity
458	Bhal	2607307-2607975	BH2488	ambiguous--smc may be annotated as too long
2939	Lmon	2784312-2784674	MYPU_4520	opposite strand dnaG
3041	Mgen	400107-399841	MG320.1	opposite strand tRNA cluster
715	Mmob	474080-474634	MMOB3820	opposite strand tRNA cluster
1171	Mmyc	315687-315178	MSC_0275	opposite strand annotated gene
1172	Mmyc	315687-315178	MSC_0275	opposite strand annotated gene
3172	Mpul	547792-547565	LMO2711	opposite strand RNA-gene (scr) in Bhal, Bsub
169	Mpul	703396-704043	MYPU_5820	ribosomal protein in opposite strand
1148	Mpul	706478-707455	MYPU_5880	opposite strand ribosomal protein
1436	Spne	199207-198743	SPR0193	opposite strand ribosomal protein
400	Tpal	321084-317926	TP0304	region upstream of gene is opposite pyrG
625	Tpal	580802-581407	TP0539	opposite strand pgk

^aCOG identifiers are local to this study.
^bCoordinates in which the first number is greater than the second indicate that the ORF is on the minus strand.

ISSN: 1471-2105