pair | PDB ID | PDB ID | MM-default | MM-noSS | MM-allSS |
---|
1 | 3chy | 2fox | 21/1.2, 88/2.2 | NR | 22/1.1, 88/2.4 |
2 | 2aza A | 1paz | 34/1.2, 79/2.0 | 8/1.5, 19/2.7 | 16/1.4, 74/2.3 |
3 | 1cew I | 1mol A | 29/1.0, 73/1.9 | 6/0.8, 7/1.5 | 26/0.9, 70/2.0 |
4 | 1cid | 2rhe | 38/1.1, 90/2.0 | 10/1.3, 21/2.4 | 11/1.3, 57/2.5 |
5 | 1crl | 1ede | 32/1.3, 184/2.5 | 6/1.3, 26/3.2 | 13/1.3, 166/2.6 |
6 | 2sim | 1nsb A | 33/1.2, 257/2.6 | 4/1.5, 28/3.2 | 20/1.2, 174/2.9 |
7 | 1ten | 3hhr B | 53/1.1, 82/1.3 | 4/1.0, 16/2.9 | 5/0.9, 22/2.9 |
8 | 1tie | 4fgf | 21/1.3, 73/2.2 | 6/1.1, 22/2.7 | 15/1.2, 97/2.2 |
9 | 2snv | 5ptp | 32/1.3, 118/2.3 | 8/1.5, 22/2.4 | 12/1.4, 103/2.4 |
10 | 1gp1 A | 2trx A | 33/1.0, 89/1.8 | 5/0.5, 17/2.7 | 30/1.2, 88/1.7 |
- Results are of the form N/RMSD, where N is the number of residue pairs matched and RMSD is the corresponding alpha-carbon root-mean-square deviation. The first set per column represents the final MatchMaker iteration (after pruning), while the second represents all equivalences from subsequent use of Match -> Align (cutoff 5.0 angstroms). MM-default: MatchMaker with default parameters (BLOSUM-62, 30% secondary structure weighting, prior secondary structure calculation, iteration cutoff 2.0 angstroms; further details are available in the supplementary information [see supplementary.doc]). MM-noSS: same as MM-default except without secondary structure scoring. MM-allSS: same as MM-default except with only the secondary structure term (100% weighting). NR: no results; MatchMaker iteration ended prematurely when the number of residue pairs fell below four.