From: GOLEM: an interactive graph-based gene-ontology navigation and analysis tool
 | Availability | Finds statistically enriched GO terms | Supports gene-based queries | Visualization As Tree | Visualization As DAG | Visualization As Interactively Expandable DAG | Accepts Local Annotations Files | Requires Internet Connection |
---|---|---|---|---|---|---|---|---|
AmiGO | Freely available; HTML-based application | No | Yes | Yes | Yes | No | No | Yes |
Gene InfoViz | Freely available; web-based application | No | Yes | No | Yes | No | No | Yes |
GOFish | Freely available; Java applet | No | Yes | Yes | No | No | No | Yes |
FatiGO | Freely available; web-based application | Yes | Yes | No | No | No | No | Yes |
GO Term Finder | Freely available; yeast-only web-based version, downloadable generic version | Yes | Yes | Yes | Yes | No | No | Yes |
TO-GO | Freely available; Java application | No | Yes | Yes | No | No | Yes | Yes (at program startup only) |
DynGO | Freely available; standalone Java package | No | Yes | Yes | No | No | Yes | No |
GenNav | Freely available; web-based application | No | Yes | No | Yes | No | No | Yes |
GoMiner | Freely available; Java application | Yes | Yes | Yes | Yes | No | Yes | No |
GOLEM | Freely available; application version, applet version | Yes | Yes | No | Yes | Yes | Yes | No |