Table 3 Alignment programs and parameters used.
From: A statistical score for assessing the quality of multiple sequence alignments
Program | Version | Parameters (strategy) |
|---|---|---|
Clustal[9] | 1.83 | default |
TCoffee[10] | 2.66 | default |
Dialign2[11] | 2.2.1 | default |
Probcons [12] | 1.10 | default |
Muscle[13] | 3.52 | default |
Mafft[14, 15] | 5.667 | -localpair -maxiterate 1000 (L-INS-i) |
Mafft[14, 15] | 5.667 | default (FFT-NS-2) |