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Table 1 Time/Space complexities of our method and the RNAforester program.

From: A method for rapid similarity analysis of RNA secondary structures

Algorithm Name

Running Time

Space requirement

Reference

a RNA forester

O(|F1||F2|deg(F1)deg(F2))

O(|F1||F2|max(deg(F1), deg(F2)))

[27]

b Our method

O(N2)

O(N2)

 
  1. a|F i | is the number of nodes in the forest F i and deg(F i ) is the degree of F i ; bN is the average size.