From: State of the art: refinement of multiple sequence alignments
BAliBASE reference alignments | ClustalW | Dialign | Mafft | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
 | Default | RASCAL | RF | REFINER | Default | RASCAL | RF | REFINER | Default | RASCAL | RF | REFINER |
Reference 1 | 10.58 | 10.34 | 51.06 | 1.93 | 22.21 | 10.00 | 38.46 | 1.65 | 26.03 | 10.33 | 53.55 | 1.67 |
Reference 2 | 64.93 | 12.62 | 206.58 | 26.67 | 175.67 | 12.61 | 179.62 | 18.97 | 123.58 | 11.61 | 129.75 | 18.85 |
Reference 3 | 98.81 | 25.84 | 495.25 | 35.98 | 304.23 | 24.84 | 397.11 | 35.60 | 241.69 | 21.69 | 237.96 | 32.35 |
Reference 4 | 49.79 | 23.04 | 370.85 | 13.95 | 496.04 | 24.08 | 607.02 | 11.18 | 222.70 | 22.08 | 271.87 | 8.91 |
Reference 5 | 35.66 | 13.23 | 327.00 | 15.19 | 201.33 | 12.00 | 300.00 | 12.93 | 103.00 | 10.00 | 209.00 | 13.45 |
Average | 51.95 | 17.01 | 290.15 | 18.74 | 239.90 | 16.71 | 304.44 | 16.07 | 143.40 | 15.14 | 180.43 | 15.05 |
BAliBASE reference alignments | Muscle | Probcons | T-Coffee | |||||||||
 | Default | RASCAL | RF | REFINER | Default | RASCAL | RF | REFINER | Default | RASCAL | RF | REFINER |
Reference 1 | 23.21 | 10.00 | 49.83 | 2.09 | 29.34 | 10.54 | 38.67 | 2.37 | 20.54 | 10.62 | 36.79 | 1.73 |
Reference 2 | 116.66 | 12.20 | 124.50 | 16.10 | 167.12 | 12.25 | 170.50 | 13.47 | 160.74 | 21.23 | 166.29 | 18.34 |
Reference 3 | 267.28 | 24.84 | 261.86 | 36.76 | 289.49 | 20.84 | 283.72 | 31.38 | 284.11 | 21.78 | 265.29 | 38.84 |
Reference 4 | 267.70 | 24.58 | 272.55 | 11.00 | 362.29 | 22.08 | 443.12 | 11.26 | 403.40 | 12.08 | 415.00 | 7.57 |
Reference 5 | 111.00 | 8.00 | 215.00 | 20.41 | 203.00 | 8.00 | 206.00 | 15.64 | 188.00 | 10.00 | 232.00 | 14.03 |
Average | 157.17 | 15.92 | 184.75 | 17.27 | 210.25 | 14.74 | 228.40 | 14.82 | 211.36 | 15.14 | 223.07 | 16.10 |