Figure 8
From: Connectivity independent protein-structure alignment: a hierarchical approach
Structures of the two largest clusters of protein domains containing a Rossmann structure motif obtained by structure alignment with 2uagA1. Column 1 shows the SSE connectivity of clusters with respect to 2uagA1. Column 2 contains the search results for 2uagA1 found for different SSE connectivities. Column 3 lists the structures that were retrieved using both 1dhs and 1cjcA2 as reference structures (intersection of sets of aligned structures found with 2uagA1, 1dhs, 1cjcA2) considering the specified SSE connectivity only. Column 4 (5) list the intersection of those structures obtained with 2uagA1 and with reference structure 1dhs (1cjcA2) that are not contained in the set of structures obtained with 1cjcA2 (1dhs) (considering the specified SSE connectivity only).