Figure 9
From: Connectivity independent protein-structure alignment: a hierarchical approach
Protein graphs. TOPS-like graphs (Gilbert et al., 2001) of 2uagA1 (left) and 1gkuB1 (right: only aligned SSEs are labeled). The same color code as in Fig. 1 is used. Circles denote a-helices, triangles b-strands. Digits in brackets yield number of residues in SSE. Connecting lines denote edges of SSEs that are in contact. Letters on edges refer to arrangement of SSE pairs. Numbers on edges are the sum of residue pair contacts. Only edges with residue contacts are shown.