Skip to main content

Table 1 Summary of structure alignment of 2uagA1 (source) and 1gkuB1

From: Connectivity independent protein-structure alignment: a hierarchical approach

quantity

value

comments and details

q res st MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqqGXbqCdaqhaaWcbaGaeeOCaiNaeeyzauMaee4CamhabaGaee4CamNaeeiDaqhaaaaa@3547@ , eq. (9)

0.6310

1 is identity, 0 is minimum

RMSD(Cα) [Å]

4.222

0.0 is identity

G-score, eq. (10)

0.0667

0.0 is identity

P-value

0.0085

<0.01 is significant

NalnRes

42

number of aligned residues

alignment topology

non-sequential

(1,2,3,4,5,6,7) → (4,3,8,6,9,10,12)a

Number of gaps, N gap

0

ignored SSEs of source structure

  1. a Assignment of SSEs between source (left) and target (right) structures numbered from N- to C-terminus according STRIDE. SSE numbering is explained in Fig. 2.