From: Effect of various normalization methods on Applied Biosystems expression array system data
Method | Site1&3 | Site2&3 | Site1&2 | Site1&2&3 |
---|---|---|---|---|
Quantile | 83.3 | 81.6 | 79.8 | 73.58 |
Median | 83.5 | 78.1 | 75.5 | 70.07 |
Scale | 82.5 | 78.6 | 75.4 | 69.87 |
VSN | 82.4 | 81.7 | 78.8 | 72.49 |
Loess | 83.8 | 81.2 | 80.8 | 74.01 |
Method | Site1 | Site2 | Site3 | Common |
Quantile | 619 | 548 | 633 | 507 |
Median | 612 | 513 | 634 | 480 |
Scale | 618 | 501 | 612 | 473 |
VSN | 620 | 542 | 619 | 507 |
Loess | 622 | 546 | 628 | 498 |