Table 2 Association mapping to phenotypes in the Mouse Phenome Database. The number of loci that exceed the gFWER threshold (k = 10) is shown for each method and selected phenotypes from the Mouse Phenome Database.
From: Comparative analysis of haplotype association mapping algorithms
Phenotype | Number of loci above gFWER k = 10 | |||||
|---|---|---|---|---|---|---|
MPD ID | Name | Sex | SMM | IH_P3 | IH_KW | IH_B |
mpd103 | BMD | f | 1 | 5 | 10 | 8 |
mpd103 | BMD | m | 1 | 3 | 4 | 2 |
mpd103 | CaCl2 pref7 | f | 15 | 16 | 20 | 18 |
mpd103 | CaCl2 pref7 | m | 19 | 13 | 43 | 15 |
mpd103 | fat wt | f | 5 | 11 | 7 | 16 |
mpd103 | fat wt | m | 0 | 1 | 0 | 0 |
mpd103 | NaCl pref25 | f | 6 | 3 | 3 | 5 |
mpd103 | NaCl pref25 | m | 4 | 4 | 3 | 7 |
mpd143 | INS 18 | f | 1 | 1 | 8 | 2 |
mpd143 | INS 18 | m | 4 | 3 | 4 | 3 |
mpd143 | LEP 18 | f | 0 | 0 | 2 | 0 |
mpd143 | LEP 18 | m | 0 | 0 | 0 | 2 |
mpd29 | estHCC | f | 4 | 3 | 0 | 3 |
mpd29 | estHCC | m | 5 | 0 | 1 | 1 |
mpd29 | freeHCC | f | 11 | 15 | 15 | 16 |
mpd29 | freeHCC | m | 1 | 1 | 2 | 2 |
mpd29 | totHCC | f | 17 | 13 | 11 | 19 |
mpd29 | totHCC | m | 2 | 0 | 1 | 0 |
mpd62 | cHGB | f | 0 | 0 | 0 | 0 |
mpd62 | cHGB | m | 20 | 9 | 14 | 9 |
mpd62 | LYM | f | 20 | 25 | 175 | 25 |
mpd62 | LYM | m | 3 | 10 | 49 | 15 |
mpd62 | MONO | f | 5 | 1 | 0 | 2 |
mpd62 | MONO | m | 7 | 15 | 28 | 14 |
mpd62 | NEUT | f | 471 | 617 | 213 | 637 |
mpd62 | NEUT | m | 299 | 185 | 59 | 250 |
mpd62 | WBC | f | 2 | 2 | 1 | 2 |
mpd62 | WBC | m | 3 | 6 | 14 | 3 |
mpd91 | ASR 80 | f | 11 | 6 | 3 | 7 |
mpd91 | ASR 80 | m | 6 | 2 | 2 | 4 |
mpd91 | PPI 20 | f | 8 | 3 | 1 | 3 |
mpd91 | PPI 20 | m | 1 | 1 | 1 | 1 |
mpd99 | TG | f | 15 | 5 | 1 | 6 |
mpd99 | TG | m | 40 | 17 | 53 | 22 |