Table 1 Detailed Contact Prediction Results on 48 Test Proteins for Sequence Separation >= 6, 12, and 24 respectively.
From: Improved residue contact prediction using support vector machines and a large feature set
Protein type | Len | Type | Separation >= 6 | Separation >= 12 | Separation >= 12 | |||
|---|---|---|---|---|---|---|---|---|
| Â | Â | Â | Acc(corr/pred) | Cov(corr/tot) | Acc(corr/pred) | Cov(corr/tot) | Acc(corr/pred) | Cov(corr/tot) |
1IG5A | 75 | alpha | 0.333 (25/75) | 0.446 (25/56) | 0.240 (18/75) | 0.486 (18/37) | 0.273 (9/33) | 0.346 (9/26) |
1HXIA | 112 | alpha | 0.304 (34/112) | 0.270 (34/126) | 0.214 (24/112) | 0.238 (24/101) | 0.015 (1/67) | 0.018 (1/55) |
1SKNP | 74 | alpha | 0.093 (4/43) | 0.133 (4/30) | 0.000 (0/18) | 0.000 (0/24) | 0.000 (0/6) | 0.000 (0/20) |
1ELRA | 128 | alpha | 0.406 (52/128) | 0.327 (52/159) | 0.384 (33/86) | 0.264 (33/125) | 0.227 (5/22) | 0.085 (5/59) |
1E29A | 135 | alpha | 0.289 (39/135) | 0.193 (39/202) | 0.111 (15/135 | 0.112 (15/134) | 0.103 (7/68) | 0.071 (7/99) |
1CTJA | 89 | alpha | 0.157 (14/89) | 0.147 (14/95) | 0.112 (10/89 | 0.204 (10/49) | 0.090 (8/89) | 0.190 (8/42) |
1J75A | 57 | alpha | 0.474 (27/57) | 0.466 (27/58) | 0.250 (7/28) | 0.206 (7/34) | 0.500 (1/2) | 0.038 (1/26) |
1ECAA | 136 | alpha | 0.103 (14/136) | 0.156 (14/90) | 0.063 (5/79) | 0.064 (5/78) | 0.070 (3/43) | 0.041 (3/74) |
1FIOA | 190 | alpha | 0.143 (19/133) | 0.161 (19/118) | 0.153 (11/72) | 0.113 (11/97) | 0.140 (8/57) | 0.110 (8/73) |
1C75A | 71 | alpha | 0.282 (20/71) | 0.211 (20/95) | 0.099 (7/71) | 0.127 (7/55) | 0.087 (4/46) | 0.089 (4/45) |
1HCRA | 52 | alpha | 0.058 (3/52) | 0.231 (3/13) | 0.056 (1/18) | 0.167 (1/6) | 0.000 (0/0) | 0.000 (0/3) |
1QJPA | 137 | beta | 0.518 (71/137) | 0.183 (71/389) | 0.489 (67/137) | 0.215 (67/312) | 0.350(48/137) | 0.300 (48/160) |
1D2SA | 170 | beta | 0.482 (82/170) | 0.180 (82/455) | 0.341 (58/170) | 0.150 (58/386) | 0.165 (28/170) | 0.096 (28/293) |
1CQYA | 99 | beta | 0.182 (18/99) | 0.080 (18/225) | 0.172 (17/99) | 0.094 (17/180) | 0.273 (27/99) | 0.197 (27/137) |
1BMGA | 98 | beta | 0.398 (39/98) | 0.177 (39/220) | 0.398 (39/98) | 0.211 (39/185) | 0.429 (42/98) | 0.323 (42/130) |
1MAIA | 119 | beta | 0.538 (64/119) | 0.298 (64/215) | 0.361 (43/119) | 0.250 (43/172) | 0.034 (4/119) | 0.048 (4/83) |
1AMXA | 150 | beta | 0.387 (58/150) | 0.162 (58/357) | 0.300 (45/150) | 0.148 (45/304) | 0.220 (33/150) | 0.141 (33/234) |
1G3PA | 192 | beta | 0.042 (8/192) | 0.019 (8/420) | 0.042 (8/192 | 0.023 (8/342) | 0.036 (7/192) | 0.026 (7/273) |
1RSYA | 135 | beta | 0.578 (78/135) | 0.259 (78/301) | 0.459 (62/135) | 0.240 (62/258) | 0.230 (31/135) | 0.177 (31/175) |
1WHIA | 122 | beta | 0.492 (60/122) | 0.201 (60/298) | 0.459 (56/122 | 0.226 (56/248) | 0.295 (36/122) | 0.303 (36/119) |
1HE7A | 107 | beta | 0.280 (30/107) | 0.183 (30/164) | 0.327 (35/107) | 0.254 (35/138) | 0.346 (37/107) | 0.394 (37/94) |
1MWPA | 96 | a+b | 0.365 (35/96) | 0.178 (35/197) | 0.385 (37/96) | 0.236 (37/157) | 0.292 (28/96) | 0.311 (28/90) |
1QGVA | 130 | a+b | 0.338 (44/130) | 0.198 (44/222) | 0.338 (44/130) | 0.221 (44/199) | 0.385 (50/130) | 0.279 (50/179) |
1DBUA | 152 | a+b | 0.434 (66/152) | 0.208 (66/317) | 0.276 (42/152) | 0.162 (42/260) | 0.151 (23/152) | 0.111 (23/207) |
1XERA | 103 | a+b | 0.466 (48/103) | 0.219 (48/219) | 0.330 (34/103) | 0.214 (34/159) | 0.204 (21/103) | 0.193 (21/109) |
1JSFA | 130 | a+b | 0.500 (65/130) | 0.316 (65/206) | 0.385 (50/130) | 0.345 (50/145) | 0.154 (20/130) | 0.235 (20/85) |
1DZOA | 120 | a+b | 0.608 (73/120) | 0.330 (73/221) | 0.500 (60/120) | 0.351 (60/171) | 0.083 (10/120) | 0.139 (10/72) |
1GRJA | 151 | a+b | 0.318 (48/151) | 0.209 (48/230) | 0.225 (34/151) | 0.186 (34/183) | 0.066 (10/151) | 0.084 (10/119) |
1MSCA | 129 | a+b | 0.620 (80/129) | 0.421 (80/190) | 0.512 (66/129) | 0.524 (66/126) | 0.225 (29/129) | 0.644 (29/45) |
1CEWI | 108 | a+b | 0.528 (57/108) | 0.300 (57/190) | 0.454 (49/108) | 0.310 (49/158) | 0.278 (30/108) | 0.316 (30/95) |
1VHHA | 157 | a+b | 0.414 (65/157) | 0.206 (65/316) | 0.338 (53/157 | 0.201 (53/264) | 0.223 (35/157) | 0.174 (35/201) |
1BUOA | 121 | a+b | 0.298 (36/121) | 0.300 (36/120) | 0.207 (25/121) | 0.291 (25/86) | 0.140 (17/121) | 0.309 (17/55) |
1G2RA | 94 | a+b | 0.340 (32/94) | 0.254 (32/126) | 0.309 (29/94) | 0.309 (29/94) | 0.234 (22/94) | 0.400 (22/55) |
1E9MA | 106 | a+b | 0.387 (41/106) | 0.186 (41/220) | 0.358 (38/106) | 0.200 (38/190) | 0.311 (33/106) | 0.210 (33/157) |
1E87A | 117 | a+b | 0.470 (55/117) | 0.239 (55/230) | 0.299 (35/117) | 0.193 (35/181) | 0.291 (34/117) | 0.227 (34/150) |
1H9OA | 108 | a+b | 0.630 (68/108) | 0.354 (68/192) | 0.352 (38/108) | 0.299 (38/127) | 0.148 (16/108) | 0.302 (16/53) |
1IDOA | 184 | a/b | 0.402 (74/184) | 0.223 (74/332) | 0.402 (74/184) | 0.250 (74/296) | 0.402 (74/184) | 0.277 (74/267) |
1CHDA | 198 | a/b | 0.429 (85/198) | 0.175 (85/487) | 0.384 (76/198) | 0.170 (76/447) | 0.338 (67/198) | 0.181 (67/370) |
1FUEA | 163 | a/b | 0.374 (61/163) | 0.185 (61/330) | 0.374 (61/163) | 0.206 (61/296) | 0.399 (65/163) | 0.251 (65/259) |
1CXQA | 143 | a/b | 0.448 (64/143) | 0.303 (64/211) | 0.350 (50/143) | 0.276 (50/181) | 0.091 (13/143) | 0.115 (13/113) |
1F4PA | 147 | a/b | 0.442 (65/147) | 0.222 (65/293) | 0.361 (53/147) | 0.205 (53/258) | 0.354 (52/147) | 0.223 (52/233) |
1ES8A | 196 | a/b | 0.240 (47/196) | 0.130 (47/361) | 0.153 (30/196) | 0.100 (30/300) | 0.189 (37/196) | 0.160 (37/231) |
1DMGA | 172 | a/b | 0.302 (52/172) | 0.176 (52/296) | 0.273 (47/172) | 0.175 (47/269) | 0.192 (33/172) | 0.155 (33/213) |
1A1HA | 85 | small | 0.424 (36/85) | 0.424 (36/85) | 0.129 (11/85) | 0.262 (11/42) | 0.000 (0/85) | 0.000 (0/0) |
9WGAB | 171 | small | 0.415 (71/171) | 0.188 (71/378) | 0.357 (61/171) | 0.268 (61/228) | 0.041 (7/171) | 0.175 (7/40) |
2MADL | 124 | small | 0.274 (34/124) | 0.106 (34/321) | 0.226 (28/124) | 0.106 (28/263) | 0.218 (27/124) | 0.116 (27/232) |
1EJGA | 46 | small | 0.261 (12/46) | 0.203 (12/59) | 0.419 (13/31 | 0.271 (13/48) | 0.458 (11/24 | 0.306 (11/36) |
1AAOA | 113 | coil-coil | 0.221 (25/113) | 0.397 (25/63) | 0.031 (3/97) | 0.158 (3/19) | 0.000 (0/35) | 0.000 (0/0) |