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Table 2 CPU usage for geometric test set.

From: ASH structure alignment package: Sensitivity and selectivity in domain classification

Program

CPU (s)

CPU/Align

Rel. to FAST

Align Missing

Dali

12895

6.2

20

121

SRUCTAL

3703

1.8

5

0

GASH

3197

1.5

5

4

RASH

1424

.69

2

0

FAST

645

.31

1

3

  1. The total CPU usage for 5 programs was computed over the geometric test set of 2,071 query-template pairs. The last column lists the number of query-template pairs for which no alignment was obtained by the method.
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BMC Bioinformatics

ISSN: 1471-2105

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