Table 6 LocusIDs and probe sets corresponding to the ten largest z-score variances for the kidney data set.
From: Interpretation of multiple probe sets mapping to the same gene in Affymetrix GeneChips
Z-score Variance | LocusID | Gene Symbol | Probe set ID | Z-score | Affymetrix Annotation Grade (Apr/06) [7] | Comments |
|---|---|---|---|---|---|---|
39.7 | 290851 | Vps36_predicted | 1373423_at | 8.39 | E | 1373423_at, consensus sequence 2.0 kb downstream from 3' end of Ensembl prediction for Vps36 |
| Â | Â | Â | 1389191_at | -0.52 | B | Â |
37.5 | 79131 | Fabp3 | 1367660_at | -0.84 | A | 1376522_at maps to intron |
| Â | Â | Â | 1376522_at | 7.82 | E | Â |
32.4 | 29223 | Ak3l1 | 1371824_at | -0.51 | B | 1371824_at, 9 probes are beyond 3' end of RefSeq sequence |
| Â | Â | Â | 1398285_at | -8.55 | A | Â |
29.0 | 293949 | RGD1310475_predicted | 1375560_at | -3.29 | A | error, opposite strands; 1389839_at, wrong strand; |
| Â | Â | Â | 1389839_at | 4.33 | E | Â |
23.4 | 171522 | Cyp2d22 | 1370329_at | 8.72 | A | alt. poly(A); |
| Â | Â | Â | 1387913_at | 1.87 | A (9/11) | 1387913_at only 9 probes align to the RefSeq transcript |
18.4 | 289696 | LOC289696 | 1371189_x_at | 0.50 | B | error; |
| Â | Â | Â | 1371190_at | 7.97 | B | 1371190_at is on opposite strand from the other 2; consensus sequences align to 5 places in genome |
| Â | Â | Â | 1388244_s_at | 0.58 | A | Â |
16.9 | 25715 | Slc11a2 | 1367877_at | -0.49 | B | alt. splicing |
| Â | Â | Â | 1388059_a_at | -6.31 | A | Â |
15.5 | 171099 | Rasd2 | 1370372_at | 4.27 | A | alt. poly(A) |
| Â | Â | Â | 1370373_at | -1.29 | A | Â |
14.7 | 287005 | Camk2n1 | 1370853_at | 4.31 | A (9/11) | error; |
| Â | Â | Â | 1374307_at | -0.37 | E | 1389876_at, wrong strand; 1374307_at, beyond 3' end of RefSeq; 1370853_at, only 9 probes align to the RefSeq transcript |
| Â | Â | Â | 1389876_at | -3.28 | E | Â |
14.6 | 25197 | St6gal1 | 1370714_a_at | -6.54 | A | alt. poly(A) |
| Â | Â | Â | 1370907_at | -1.13 | A | Â |