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Figure 12 | BMC Bioinformatics

Figure 12

From: Can Clustal-style progressive pairwise alignment of multiple sequences be used in RNA secondary structure prediction?

Figure 12

The reference secondary structure predicted for 5S rRNA sequence V00336 (a), the structure predicted by mfold as the unconstrained optimum (b), the conserved structure predicted by the nearest-neighbour consensus algorithm with gap penalty 4 or 6 kcal/mol (c), and the structure predicted by mfold as the optimum, when it was forced to include the consensus basepairs (d). Images produced by the sir graph utility of the mfold program [24].

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BMC Bioinformatics

ISSN: 1471-2105

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