From: MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data
10 heavy to 1 light | 1 heavy to 10 light | ||||||||
---|---|---|---|---|---|---|---|---|---|
MSQuant | PepQuan | MASPECTRAS | MSQuant | PepQuan | MASPECTRAS | ||||
auto | manual | auto | manual | auto | manual | auto | manual | ||
# peptides | 22 | 33 | 27 | 40 | # peptides | 20 | 82 | 28 | 39 |
mean | 4.64 | 8.94 | 8.31 | 9.85 | mean | 7.54 | 7 | 9.77 | 9.29 |
stdev | 4.83 | 4.9 | 2.85 | 2.99 | stdev | 4.94 | 2.51 | 3.96 | 1.92 |
CV % | 104.09% | 54.81% | 34.30% | 30.36% | CV % | 65.52% | 35.86% | 40.53% | 20.67% |
ratio: heavy/light | ratio: light/heavy | ||||||||
5 heavy to 1 light | 1 heavy to 5 light | ||||||||
MSQuant | PepQuan | MASPECTRAS | MSQuant | PepQuan | MASPECTRAS | ||||
auto | manual | auto | manual | auto | manual | auto | manual | ||
# peptides | 14 | 43 | 50 | 53 | # peptides | 16 | 67 | 41 | 40 |
mean | 2.94 | 4.27 | 4.16 | 4.67 | mean | 13.36 | 3.74 | 4.25 | 4.84 |
stdev | 2.3 | 1.69 | 1.56 | 1.12 | stdev | 5.18 | 1.36 | 1.15 | 0.93 |
CV % | 78.23% | 39.58% | 37.50% | 23.98% | CV % | 38.77% | 36.36% | 27.06% | 19.21% |
ratio: heavy/light | ratio: light/heavy | ||||||||
2 heavy to 1 light | 1 heavy to 2 light | ||||||||
MSQuant | PepQuan | MASPECTRAS | MSQuant | PepQuan | MASPECTRAS | ||||
auto | manual | auto | manual | auto | manual | auto | manual | ||
# peptides | 25 | 50 | 48 | 72 | # peptides | 16 | 74 | 42 | 47 |
mean | 1.048 | 2.17 | 2.07 | 2.03 | mean | 4.24 | 2.07 | 2.11 | 1.94 |
stdev | 1.15 | 0.7 | 0.71 | 0.54 | stdev | 4.97 | 3.04 | 0.63 | 0.3 |
CV % | 109.73% | 32.26% | 34.30% | 26.60% | CV % | 117.22% | 146.86% | 29.86% | 15.46% |
ratio: heavy/light | ratio: light/heavy | ||||||||
1 heavy to 1 light | |||||||||
MSQuant | PepQuan | MASPECTRAS | |||||||
auto | manual | auto | manual | ||||||
# peptides | 15 | 67 | 98 | 77 | |||||
mean | 0.92 | 1.28 | 0.97 | 0.99 | |||||
stdev | 0.46 | 0.48 | 0.24 | 0.19 | |||||
CV % | 49.30% | 37.50% | 24.74% | 19.10% |