Table 4 Clustering results of the 33 (α/β)8-barrel protein sequences. The clustering correspondence of each of the 33 (α/β)8-barrel protein sequences (rows), obtained by Côté et al. [41] and Fukamizo et al. [44] and each of the clustering algorithms tested (columns). Each number in the table represents the corresponding cluster of the row's protein sequence obtained with the column's method. They are bold when they correspond to Côté et al. [41] and Fukamizo et al. [44] classification. The symbol "/" means that the row's protein sequence is unclustered.
From: CLUSS: Clustering of protein sequences based on a new similarity measure
Protein sequences | Côté Fukamizo | CLUSS | BLAST | MCL | SPC |
|---|---|---|---|---|---|
GaEco | 1 | 1 | 1 | 1 | 1 |
GaA | 1 | 1 | / | 1 | 1 |
GaK | 1 | 1 | / | 1 | 1 |
GaC | 1 | 1 | / | 1 | 1 |
GaEcl | 1 | 1 | 1 | 1 | 1 |
GaL | 1 | 1 | 1 | 1 | 1 |
MaA | 2 | 2 | 2 | 1 | 2 |
MaB | 2 | 2 | 2 | 2 | 2 |
MaH | 2 | 2 | 2 | 2 | 2 |
MaM | 2 | 2 | 2 | 2 | 2 |
MaC | 2 | 3 | 2 | 1 | 2 |
MaT | 2 | 3 | 2 | 1 | 2 |
UnA | 3 | 3 | 3 | 2 | 2 |
UnBv | 3 | 3 | 3 | 2 | 2 |
UnBc | 3 | 3 | / | 2 | 2 |
UnBm | 3 | 3 | 3 | 2 | 2 |
UnBp | 3 | 3 | 3 | 2 | 2 |
UnR | 3 | 3 | 3 | 2 | 2 |
CsAo | 4 | 4 | / | 1 | 3 |
CsS | 4 | 4 | 4 | 1 | 3 |
CsG | 4 | 4 | 4 | 1 | 3 |
CsM | 4 | 4 | 4 | 1 | 3 |
CsN | 4 | 4 | / | 1 | 3 |
CsAn | 4 | 4 | / | 1 | 3 |
CsH | 4 | 4 | 4 | 1 | 3 |
CsE | 4 | 4 | 4 | 1 | 3 |
GIC | 5 | 5 | 5 | 1 | 1 |
GIE | 5 | 5 | 5 | 1 | 1 |
GIH | 5 | 5 | 5 | 1 | 1 |
GIL | 5 | 5 | 5 | 1 | 1 |
GIM | 5 | 5 | 5 | 1 | 1 |
GIF | 5 | 5 | 5 | 1 | 1 |
GIS | 5 | 5 | 5 | 1 | 1 |