From: Analysis on multi-domain cooperation for predicting protein-protein interactions
Superdomains | Descriptions | GO similarity |
---|---|---|
PF00488, PF05192 | (1) MutS domain V, ATP binding, damaged DNA binding, mismatch repair (2) MutS domain III, DNA metabolism | 2-1-2-5-11-27-1-8-10 2-1-2-5-11-27-1 Similarity: 7 |
PF02775, PF00205 | (1) Thiamine pyrophosphate enzyme, C-terminal TPP binding domain, catalytic activity, thiamin pyrophosphate binding (2) Thiamine pyrophosphate enzyme, central domain, magnesium ion binding, thiamin pyrophosphate binding | 1-1-2-12-1-8 1-1-2-12-1-8 Similarity: 6 |
PF08033, PF04810 | (1) Sec23/Sec24 beta-sandwich domain (2) Sec23/Sec24 zinc finger, COPII vesicle coat, protein binding, intracellular protein transport, ER to Golgi vesicle-mediated transport | Â |
PF03953, PF00091 | (1) Tubulin/FtsZ family, C-terminal domain, protein complex, GTP binding, GTPase activity, protein polymerization (2) Tubulin/FtsZ family, GTPase domain | Â |
PF07687, PF01546 | (1) Peptidase dimerisation domain, hydrolase activity, protein dimerization activity (2) Peptidase family M20/M25/M40, metallopeptidase activity, proteolysis | 1-1-3-16 1-1-3-16-18-6 Similarity: 4 |
PF05000, PF00623 | (1) RNA polymerase Rpb1, domain 4, DNA-directed RNA polymerase activity, DNA binding, transcription (2) RNA polymerase Rpb1, domain 2, nucleus, DNA-directed RNA polymerase activity, DNA binding, transcription | 1-1-3-39-16-3-16 1-1-3-39-16-3-16 Similarity: 7 |
PF08544, PF00288 | (1) GHMP kinases C terminal (2) GHMP kinases N terminal domain, ATP binding, kinase activity, phosphorylation | Â |
PF01798, PF08060 | (1) Putative snoRNA binding domain (2) NOSIC (NUC001) domain | Â |
PF02800, PF00044 | (1) Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain, NAD binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, glycolysis (2) Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain, NAD binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, glycolysis | 2-1-2-5-11-1-4-9-1-5-1 2-1-2-5-11-1-4-9-1-5-1 Similarity: 11 |
PF08030, PF08022 | (1) Ferric reductase NAD binding domain (2) FAD-binding domain | Â |