Parameter | EC | revised PE |
---|
p
align,exp
| 1.60 | 1.79 |
p
break,fac
| 1.79 | 3.25 |
p
break,exp
| 1.57 | 0.38 |
p
break,term,exp
| | |
p
insert,fac
| 0.43 | 0.83 |
p
insert,term,fac
| 0.31 | 0.58 |
p
insert,exp
p
insert,term,exp
| 1.77 | 0.89 |
- Penalties for alignment of positions, breaking a protein chain and for inserting a chain fragment opposite to a gap. The same parameter values are used in the profile alignment as well as in the refinement routine. Please refer to UB, A.R.Ortíz, MP, FT: Effective Connectivity: A structural profile for multi-domain proteins, submitted, for the definition of the EC profile and to [10] for the revised PE.