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Table 2 Dauer recovery-specific gene expression profiles.

From: Extracting gene expression patterns and identifying co-expressed genes from microarray data reveals biologically responsive processes

 

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pattern number

Dauer recovery

L1 starvation

pattern number

Dauer recovery

L1 starvation

Transient

2

No change at start, gradually decrease, to significantly down regulated at end

Down regulated at all time points

1

From up regulated to no change

Down regulated

 

3

Up regulated at start, gradually decrease to no change at end

No change at all time points

   
 

10

No change at start, gradually decrease, to significantly down regulated at end

No change at start, then, stay minimally down regulated

6

No change at start, gradually decrease, to significantly down regulated at end

Down regulated

 

11

No change at start, jump to significantly up regulated after the start, gradually decrease to no change at end

No change at all time points

   

Early

6

Down regulated at 0 h. from up regulated to minimally up regulated

No or minimal change

   
 

7

Up regulated at 0 h, peak at 5 h, then to minimally up regulated

Minimally down regulated

   
 

9

From no change to down regulated

No change or Minimally down regulated

   

Climbing

14

Down regulated at 0 h, climbing to peak at 3 to 5 h

No or minimal change

   

Late

12

Up regulated at late time points

Up regulated at late time points

4

Up regulated at late time points

Up regulated at late time points

Dauer enriched

4

Down regulated

From up regulated to no change

2

Down regulated

From up regulated to no change

  1. Those patterns not listed below possess similar responses between dauer recovery and L1 starvation except the late responses.