Gene Set | Before standardization | After standardization | VSN | ||||||
---|---|---|---|---|---|---|---|---|---|
Global | Ancova | SAM-GS | Global | Ancova | SAM-GS | Global | Ancova | SAM-GS | |
ATM Pathway* | <0.001 | <0.001 | <0.001 | <0.001 | 0.002 | <0.001 | 0.001 | 0.001 | <0.001 |
BAD Pathway** | <0.001 | 0.007 | <0.001 | <0.001 | <0.001 | <0.001 | 0.004 | 0.004 | <0.001 |
Calcineurin Pathway$ | 0.068 | 0.084 | <0.001 | 0.007 | 0.002 | <0.001 | 0.004 | 0.005 | 0.011 |
Cell cycle regulator† | 0.021 | 0.017 | <0.001 | 0.002 | 0.001 | <0.001 | 0.002 | <0.001 | 0.003 |
Hsp27Pathway** | 0.047 | 0.044 | <0.001 | <0.001 | 0.001 | <0.001 | 0.011 | 0.005 | <0.001 |
Mitochondria pathway** | 0.002 | 0.002 | <0.001 | 0.007 | 0.007 | <0.001 | 0.013 | 0.006 | <0.001 |
p53 signaling pathway* | 0.112 | 0.101 | <0.001 | 0.003 | 0.003 | 0.001 | 0.006 | 0.005 | 0.006 |
p53 _UP* | 0.003 | 0.004 | <0.001 | <0.001 | <0.001 | <0.001 | 0.019 | 0.018 | <0.001 |
p53 hypoxiaPathway* | 0.626 | 0.622 | <0.001 | <0.001 | <0.001 | <0.001 | 0.044 | 0.041 | <0.001 |
p53 Pathway* | 0.142 | 0.150 | <0.001 | <0.001 | <0.001 | <0.001 | <0.001 | 0.001 | <0.001 |
Raccycd Pathway† | 0.177 | 0.181 | <0.001 | 0.001 | <0.001 | <0.001 | 0.004 | 0.009 | 0.006 |
Radiation_sensitivity* | 0.119 | 0.135 | <0.001 | <0.001 | <0.001 | <0.001 | 0.014 | 0.020 | <0.001 |
SA_TRKA_RECEPTOR‡ | 0.254 | 0.252 | <0.001 | 0.001 | <0.001 | <0.001 | 0.004 | 0.001 | 0.006 |
bcl2family & reg. network** | 0.102 | 0.100 | 0.001 | 0.001 | 0.005 | <0.001 | 0.010 | 0.014 | 0.001 |
Cell cycle arrest† | 0.099 | 0.099 | 0.001 | 0.027 | 0.018 | 0.005 | 0.003 | 0.005 | 0.007 |
Ceramide Pathway** | 0.002 | 0.006 | 0.001 | 0.004 | 0.004 | <0.001 | 0.001 | 0.001 | <0.001 |
CR_DEATH* | 0.001 | 0.004 | 0.008 | 0.029 | 0.017 | 0.004 | 0.143 | 0.108 | 0.005 |