Table 1 Average correlation for the Affymetrix, C3B, and GMU Stratagene Technical Replicates dataset for various expression summary methods.
From: Application of a correlation correction factor in a microarray cross-platform reproducibility study
Platform | Expression Summary Method | Average Correlation |
|---|---|---|
Affymetrix | MAS 5.0 | 0.9955 |
(N = 22,283) | RMA | 0.9994 |
| Â | GC-RMA | 0.9998 |
C3B | Channel 1 foreground | 0.6560 |
(N = 21,168) | Print-tip loess normalized Ch1 | 0.6593 |
GMU | Cy5 foreground | 0.6236 |
(N = 21,168) | Print-tip loess normalized Cy5 | 0.8475 |