From: SAT, a flexible and optimized Web application for SSR marker development
Origin of sequences | Species | Number of sequences analyzed | Number of sequences with SSRs | Consensus | Singletons and singlets | Sequences with specific primer pairs | Sequences with non specific primer pairs | Sequences without primers |
---|---|---|---|---|---|---|---|---|
SSR enriched banks | Sorghum | 2747 | 1176 | 379 | 144 | 346 (66.16%) | 63 (12.04%) | 114 (21.80%) |
Coffee | 1149 | 948 | 246 | 251 | 295 (59.36%) | 45 (9.05%) | 157 (31.59%) | |
Guava | 464 | 440 | 57 | 272 | 190 (57.75%) | 6 (1.82%) | 133 (40.43%) | |
Yam | 209 | 172 | 14 | 121 | 54 (40.00%) | 12 (8.89%) | 69 (51.11%) | |
Locust | 182 | 171 | 8 | 143 | 54 (35.76%) | 16 (10.60%) | 81 (53.64%) | |
Amblyomma variegatum | 86 | 79 | 8 | 38 | 10 (21.74%) | 15 (32.61%) | 21 (45.65%) | |
EST banks | Coffee | 2529 | 228 | 3 | 219 | 176 (79.28%) | 13 (5.86%) | 33 (14.86%) |
Citrus | 1842 | 350 | 36 | 270 | 213 (69.61%) | 44 (14.38%) | 49 (16.01%) |