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Table 1 P-values obtained from a paired t-test of adjusted Rand index from MCLUST and PUMA-CLUST. A paired t-test is performed for MCLUST and each of PUMA-CLUST results. The 10 simulated datasets in Figure 3 are used for each test. PC represents PUMA-CLUST results on the original simulated data. PC.01, PC.1 and PC.2 represent the PUMA-CLUST results on the datasets with added noise drawn from N MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBamrtHrhAL1wy0L2yHvtyaeHbnfgDOvwBHrxAJfwnaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaWaaeGaeaaakeaaimaacqWFneVtaaa@383B@ (0, 0.01), N MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBamrtHrhAL1wy0L2yHvtyaeHbnfgDOvwBHrxAJfwnaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaWaaeGaeaaakeaaimaacqWFneVtaaa@383B@ (0, 0.1) and N MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBamrtHrhAL1wy0L2yHvtyaeHbnfgDOvwBHrxAJfwnaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaWaaeGaeaaakeaaimaacqWFneVtaaa@383B@ (0, 0.2) respectively.

From: Including probe-level uncertainty in model-based gene expression clustering

No of conditions

6 groups

7 groups

 

PC

PC.01

PC.1

PC.2

PC

PC.01

PC.1

PC.2

10

1.10e-8

9.37e-8

5.90e-8

5.67e-7

5.67e-9

7.77e-9

3.87e-7

5.87e-6

20

2.39e-8

1.80e-8

2.30e-7

4.22e-7

4.03e-9

4.10e-9

1.13e-7

8.56e-8

30

3.54e-7

1.38e-6

2.99e-6

5.00e-6

9.96e-7

4.34e-7

1.14e-7

3.75e-6