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Table 6 The number of PubMed citations associated with Entrez Gene IDs for each gene

From: Extracting unrecognized gene relationships from the biomedical literature via matrix factorizations

  

Entrez Gene ID

The number of PubMed citations

Symbol

Gene description

Human

Mouse

Rat

Human

Mouse

Rat

Total

A2M

alpha-2-macroglobulin

2

232345

24153

10

10

10

30

ABL1

v-abl Abelson murine leukemia viral oncogene homolog 1

25

11350

311860

10

10

4

24

APBA1

amyloid beta precursor protein-binding, family A, member 1

320

108119

83589

10

2

6

18

APBB1

amyloid beta precursor protein-binding, family B, member 1

322

11785

29722

10

10

7

27

APLP1

amyloid beta precursor-like protein 1

333

11803

29572

10

10

2

22

APLP2

amyloid beta precursor-like protein 2

334

11804

25382

10

10

5

25

APOE

apolipoprotein E

348

11816

25728

10

10

8

28

APP

amyloid beta precursor protein

351

11820

54226

10

10

10

30

ATOH1

atonal homolog 1 (Drosophila)

474

11921

-

6

10

-

16

BRCA1

breast cancer 1, early onset

672

12189

24227

10

10

6

26

BRCA2

breast cancer 2, early onset

675

-

25082

10

-

3

13

CDK5

cyclin-dependent kinase 5

1020

12568

140908

10

10

10

30

CDK5R1

cyclin-dependent kinase 5, regulatory subunit 1 (p35)

8851

12569

116671

10

10

10

30

CDK5R2

cyclin-dependent kinase 5, regulatory subunit 2 (p39)

8941

12570

-

10

10

-

20

DAB1

disabled homolog 1 (Drosophila)

1600

13131

266729

10

10

4

24

DLL1

delta-like 1 (Drosophila)

28514

13388

84010

10

10

2

22

DNMT1

DNA (cytosine-5-)-methyltransferase 1

1786

13433

84350

10

10

3

23

EGFR

epidermal growth factor receptor

1956

13649

24329

10

10

10

30

ERBB2

v-erb-b2 erythroblastic leukemia viral oncogene homolog 2

2064

13866

24337

10

10

10

30

ETS1

v-ets erythroblastosis virus E26 oncogene homolog 1

2113

23871

24356

10

10

10

30

FOS

v-fos FBJ murine osteosarcoma viral oncogene homolog

2353

14281

24371

10

10

10

30

FYN

FYN oncogene related to SRC, FGR, YES

2534

14360

25150

10

10

10

30

GLI

glioma-associated oncogene homolog 1

2735

14632

140589

10

10

1

21

GLI2

GLI-Kruppel family member GLI2

2736

14633

-

10

10

-

20

GLI3

GLI-Kruppel family member GLI3

2737

14634

140588

10

10

1

21

JAG1

jagged 1 (Alagille syndrome)

182

16449

29146

10

10

5

25

KIT

feline sarcoma viral oncogene homolog

3815

16590

64030

10

10

8

28

LRP1

low density lipoprotein-related protein 1

4035

16971

-

10

10

-

20

LRP8

low density lipoprotein receptor-related protein 8

7804

16975

-

10

10

-

20

MAPT

microtubule-associated protein tau

4137

17762

29477

10

10

10

30

MYC

v-myc myelocytomatosis viral oncogene homolog (avian)

4609

17869

24577

10

10

10

30

NOTCH1

Notch homolog 1, translocation-associated (Drosophila)

4851

18128

25496

10

10

10

30

NRAS

neuroblastoma RAS viral (v-ras) oncogene homolog

4893

18176

24605

10

10

6

26

PAX2

paired box gene 2

5076

18504

-

10

10

-

20

PAX3

paired box gene 3 (Waardenburg syndrome 1)

5077

18505

114502

10

10

2

22

PSEN1

presenilin 1 (Alzheimer disease 3)

5663

19164

29192

10

10

10

30

PSEN2

presenilin 2 (Alzheimer disease 4)

5664

19165

81751

10

10

10

30

PTCH

patched homolog (Drosophila)

5727

19206

89830

10

10

3

23

RELN

reelin

5649

19699

24718

10

10

10

30

ROBO1

roundabout, axon guidance receptor, homolog 1

6091

19876

58946

10

10

2

22

SHC1

Src homology 2 domain containing transforming protein 1

6464

20416

85385

10

10

10

30

SHH

sonic hedgehog homolog (Drosophila)

6469

20423

29499

10

10

10

30

SMO

smoothened homolog (Drosophila)

6608

20596

-

10

9

-

19

SRC

v-src sarcoma viral oncogene homolog

6714

20779

83805

10

10

10

30

TGFB1

transforming growth factor, beta 1

7040

21803

59086

10

10

10

30

TP53

tumor protein p53 (Li-Fraumeni syndrome)

7157

22059

24842

10

10

10

30

VLDLR

very low density lipoprotein receptor

7436

22359

25696

10

10

5

25

WNT1

wingless-type MMTV integration site family, member 1

7471

22408

24881

10

10

5

25

WNT2

wingless-type MMTV integration site family member 2

7472

22413

114487

10

10

6

26

WNT3

wingless-type MMTV integration site family, member 3

7473

22415

24882

8

10

4

22