From: Major copy proportion analysis of tumor samples using SNP arrays
Sample | SNP | Chromo-some | Position(Mb) | PCR allele A Copy | PCR allele B Copy | PCR MAP | Array MAP | Array MCP | Array Copy |
---|---|---|---|---|---|---|---|---|---|
S0465T | 1894228 | 3 | 183.975 | 25.18 | 1.68 | 0.94 | 0.86 | 0.8 | 4.8 |
S0515T | 1894075 | 3 | 183.786 | 2.42 | 38.37 | 0.94 | 0.65 | 0.8 | 17.47 |
HCC827 | 2568690 | 7 | 54.606 | 135.92 | 1.97 | 0.99 | 0.82 | 0.8 | 8.07 |
H2087 | 2804962 | 8 | 128.906 | 1.23 | 6.03 | 0.83 | 0.74 | 0.7 | 6.05 |
H2122 | 2804228 | 8 | 128.037 | 58.46 | 3.39 | 0.95 | 0.98 | 0.95 | 6.55 |
HCC827 | 2804646 | 8 | 128.332 | 0.06 | 7.58 | 0.99 | 0.9 | 0.95 | 9.39 |
S0515T | 589797 | 12 | 32.822 | 0.06 | 7.12 | 0.99 | 0.96 | 0.55 | 4.32 |
H2087 | 590880 | 12 | 33.8 | 17.32 | 0.03 | 1 | 0.88 | 0.95 | 10.42 |
H2087 | 611421 | 12 | 57.198 | 4.86 | 0.17 | 0.97 | 0.95 | 0.8 | 11.3 |
HCC1359 | 1679843 | 22 | 19.774 | 1.03 | 8.36 | 0.89 | 0.82 | 0.9 | 8.74 |