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Table 13 Annotations of cellular component ontology for biclusters identified by the proposed algorithm for multiplicative models at p-value < 0.001.

From: Identification of coherent patterns in gene expression data using an efficient biclustering algorithm and parallel coordinate visualization

Bicluster index

Annotation

P-value

Corrected P-value

Genes

1

DNA-directed RNA polymerase I complex

9.40E-04

1.50E-01

YBR154C, YDR156W, YNL113W, YOR224C, YOR341W

 

nucleoplasm

6.60E-04

1.06E-01

YAL059W, YDL051W, YKR002W, YKR095W, YNL175C, YNR053C

 

nucleolus

9.69E-17

1.55E-14

YAL025C, YAL059W, YBL004W, YBL026W, YBR142W, YCL031C, YCL054W, YCL059C, YDL051W, YDR299W, YDR312W, YDR339C, YDR365C, YDR378C, YEL026W, YGR090W, YGR159C, YJR002W, YKR060W, YLL008W, YLL034C, YLR051C, YLR068W, YLR186W, YLR223C, YMR049C, YMR131C, YMR233W, YMR269W, YMR290C, YNL110C, YNL132W, YNL147W, YNL175C, YNL299W, YNR038W, YNR046W, YNR053C, YOL041C, YOL077C, YOL144W, YOR145C, YOR272W, YPL211W, YPR112C

 

nucleus

1.60E-05

2.56E-03

YAL059W, YAR015W, YBL016W, YBL024W, YBL054W, YBL093C, YBR034C, YBR066C, YBR090C, YBR112C, YBR160W, YBR173C, YCL011C, YCL031C, YCL054W, YCR036W, YCR051W, YCR059C, YCR060W, YCR090C, YDL002C, YDL006W, YDL047W, YDL051W, YDL070W, YDL076C, YDL153C, YDL166C, YDR006C, YDR091C, YDR098C, YDR143C, YDR155C, YDR162C, YDR165W, YDR260C, YDR296W, YDR305C, YDR361C, YDR365C, YDR390C, YDR432W, YDR465C, YDR477W, YEL007W, YER012W, YER042W, YER148W, YGL130W, YGR090W, YGR159C, YGR200C, YJL140W, YJR002W, YJR017C, YJR105W, YKL143W, YKR060W, YKR072C, YKR079C, YKR096W, YLL034C, YLR007W, YLR039C, YLR051C, YLR052W, YLR068W, YLR107W, YLR186W, YLR223C, YLR262C, YLR265C, YLR327C, YLR384C, YLR420W, YLR430W, YML032C, YML053C, YML080W, YML081W, YML114C, YMR009W, YMR021C, YMR049C, YMR070W, YMR074C, YMR092C, YMR176W, YMR178W, YMR226C, YMR233W, YMR235C, YMR308C, YNL004W, YNL016W, YNL110C, YNL136W, YNL164C, YNL186W, YNL199C, YNL215W, YNL299W, YNR003C, YNR046W, YNR053C, YOL093W, YOL108C, YOL143C, YOR006C, YOR056C, YOR123C, YOR145C, YOR189W, YOR206W, YOR252W, YOR272W, YOR283W, YOR304W, YPL047W, YPL086C, YPL204W, YPL212C, YPL268W, YPR069C, YPR073C

 

small nucleolar ribonucleoprotein complex

1.97E-05

3.16E-03

YBL004W, YBL026W, YCL059C, YDL153C, YDR378C, YDR449C, YEL026W, YGR090W, YJL191W, YJR002W, YLR186W, YLR222C, YML093W, YMR093W, YNL147W, YPR137W

5

incipient bud site

4.75E-04

2.18E-02

YGR189C, YKR090W, YLL021W, YNL233W, YNL304W

 

nucleus

1.26E-05

5.80E-04

YBL046W, YBR073W, YBR088C, YCR065W, YDL006W, YDL103C, YDL164C, YDL197C, YER003C, YER152C, YGR042W, YKL045W, YKL089W, YKL113C, YLL022C, YLR233C, YLR376C, YML021C, YML061C, YML109W, YOR074C, YOR279C, YOR342C, YPL008W, YPL127C, YPL208W, YPL256C, YPR120C, YPR135W

 

bud neck

4.38E-04

2.01E-02

YDR507C, YGR152C, YKL101W, YKR090W, YLL021W, YNL233W, YNL304W

11

MCM complex

8.91E-04

5.52E-02

YEL032W, YLR274W, YPR019W

12

bud neck

1.07E-05

3.33E-04

YBR038W, YBR200W, YGR092W, YHR023W, YIL106W, YLR190W, YMR001C, YPR119W

14

spindle microtubule

6.05E-05

2.12E-03

YBL063W, YBR156C, YGL061C

16

endoplasmic reticulum

1.91E-04

4.21E-03

YBR229C, YCR011C, YCR044C, YDL204W, YIL124W, YML128C, YMR134W

 

mitochondrion

7.89E-04

1.74E-02

YBR003W, YBR026C, YBR037C, YBR147W, YBR229C, YCR005C, YHL021C, YHR067W, YIL087C, YIL124W, YLR142W, YLR253W, YML128C, YNL073W

24

cytosolic large ribosomal subunit (sensu Eukaryota)

1.11E-45

7.07E-44

YBL027W, YBL092W, YBR031W, YBR191W, YDL075W, YDL081C, YDL082W, YDL130W, YDL136W, YDL191W, YDR012W, YDR382W, YDR418W, YDR471W, YDR500C, YER117W, YHR141C, YJL177W, YJL189W, YKL006W, YKL180W, YKR094C, YLL045C, YLR029C, YLR075W, YLR185W, YLR325C, YLR340W, YLR344W, YLR406C, YLR448W, YML073C, YMR121C, YMR194W, YMR242C, YNL067W, YNL162W, YNL301C, YOL039W, YOL127W, YOR234C, YOR312C, YPL143W, YPL198W, YPR043W, YPR102C

 

cytosolic small ribosomal subunit (sensu Eukaryota)

7.45E-43

4.77E-41

YBL072C, YBR048W, YBR181C, YBR189W, YCR031C, YDL061C, YDL083C, YDR025W, YDR064W, YDR447C, YDR450W, YER074W, YER102W, YER131W, YGR118W, YGR214W, YIL069C, YJL136C, YJL190C, YJR123W, YJR145C, YKL156W, YKR057W, YLR048W, YLR167W, YLR333C, YLR388W, YLR441C, YML024W, YML026C, YML063W, YMR116C, YMR143W, YMR230W, YNL096C, YNL302C, YOL040C, YOR167C, YOR293W, YOR369C, YPL081W, YPL090C

 

ribosome

4.84E-06

3.10E-04

YAL003W, YBR118W, YDR385W, YEL034W, YKL056C, YLR249W, YOL139C, YPR163C

28

condensed nuclear chromosome

2.75E-04

2.20E-03

YHR157W, YPL194W

31

chromosome, telomeric region

4.77E-04

1.43E-02

YAR007C, YNL312W

 

nuclear cohesin complex

3.79E-05

1.14E-03

YDL003W, YFL008W, YIL026C

 

DNA replication factor A complex

4.77E-04

1.43E-02

YAR007C, YNL312W

 

replication fork

2.99E-04

8.97E-03

YDL164C, YKL108W, YLR103C

34

mitochondrial inner membrane

4.76E-04

2.14E-02

YDL198C, YDR197W, YER058W, YER141W, YOL027C, YPR011C

 

mitochondrion

5.60E-06

2.52E-04

YDL198C, YDR194C, YDR197W, YDR301W, YDR322W, YDR505C, YER058W, YER141W, YGL187C, YHR147C, YJR048W, YKL150W, YLR168C, YML030W, YML052W, YML120C, YMR098C, YMR145C, YMR188C, YNL306W, YNR036C, YOL009C, YOL027C, YOL038W, YOL059W, YPR011C

35

retrotransposon nucleocapsid

3.41E-06

9.89E-05

YCL020W, YER160C, YJR026W, YJR028W, YML040W, YOR142W

36

glycine cleavage complex

1.94E-05

4.46E-04

YAL044C, YDR019C, YMR189W

41

nuclear exosome (RNase complex)

4.93E-05

2.02E-03

YNL251C, YOL021C, YOR001W

54

MCM complex

1.19E-04

4.65E-03

YBR202W, YGL201C, YLR274W

 

pre-replicative complex

9.21E-04

3.59E-02

YBR202W, YGL201C, YLR274W

56

central plaque of spindle pole body

3.03E-05

8.78E-04

YDR356W, YKL042W, YPL124W