2DB: a Proteomics database for storage, analysis, presentation, and retrieval of information from mass spectrometric experiments

Table 1 Data export format.

Band\|Spot	Protein	Description	Spectral Count	Distinct Peptides	Sequence Coverage	Sequest (normal/intron split)	GPF-Sequest (normal/intron split)
B1-1	156523 60278	estExt_GenewiseH_1.C_820026	5	2	0.08	2\|-	-\|-
B1-5	153056	153056	15	4	0.237	4\|-	2\|-
B1-5	78552	estExt_GenewiseW_1.C_140139	15	4	0.237	4\|-	2\|-
B1-6	153056	153056	14	4	0.207	4\|-	2\|-
B1-6	78552	estExt_GenewiseW_1.C_140139	14	4	0.207	4\|-	2\|-
B1-7	163297	163297	11	4	0.261	4\|-	-\|-
B1-7	24036	estExt_fgenesh1_pm.C_40007	11	4	0.28	4\|-	-\|-
B1-8	156858 132678	estExt_gwp_1H.C_660032	11	2	0.098	1\|1	1\|1
B2-2	153056	153056	23	5	0.324	5\|-	2\|-
B2-2	155433 133575	estExt_gwp_1W.C_80187	23	4	0.261	4\|-	-\|-
B2-2	78552	estExt_GenewiseW_1.C_140139	23	5	0.324	5\|-	2\|-
B2-3	158139	fgenesh2_kg.C_scaffold_74000005	5	1	0.035	1\|-	1\|-
B2-4	165269	165269	6	1	0.053	-\|-	1\|-
B2-5	158876 184810	estExt_fgenesh2_kg.C_320006	9	1	0.043	1\|-	1\|-
B2-6	155433 133575	estExt_gwp_1W.C_80187	22	3	0.21	3\|-	-\|-
B2-6	163297	163297	22	6	0.385	6\|-	1\|-
B2-6	24036	estExt_fgenesh1_pm.C_40007	22	6	0.413	6\|-	1\|-
B2-9	155433 133575	estExt_gwp_1W.C_80187	12	5	0.315	5\|-	1\|-

This table shows a section of meta-data about identifications we were able to make in an experiment. The exported data contains only meta-information about the identified proteins. This information includes the protein identifier, the number of supporting peptides, the sequence coverage and other information. Files with comma separated values (csv) can be imported in basically all spreadsheet calculation software such as Microsoft Excel, Systat's SigmaPlot and OpenOffice's Calc.

ISSN: 1471-2105