From: A fast structural multiple alignment method for long RNA sequences
SPS:Family | %id | length | MXSCARNA | Murlet | ProbCons | MAFFT | ClustalW | StrAl | RNASampler | Â |
---|---|---|---|---|---|---|---|---|---|---|
tRNA | 69 | 76 | 91 | 91 | 91 | 89 | 85 | 89 | 92 | Â |
Intron_gpII | 64 | 80 | 79 | 80 | 80 | 77 | 75 | 79 | 74 | Â |
5S_rRNA | 70 | 117 | 89 | 90 | 90 | 89 | 88 | 89 | 90 | Â |
U5 | 72 | 118 | 74 | 75 | 76 | 72 | 72 | 73 | 78 | Â |
SRP | 67 | 300 | 88 | 88 | 88 | 87 | 87 | 86 | 82 | Â |
Average(all) | Â | Â | 84 | 85 | 85 | 83 | 81 | 83 | 83 | Â |
Average(sub) | Â | Â | 83 | 84 | 84 | 82 | 80 | 82 | 83 | Â |
SPS:Family | RNAlara | Locarna | FoldalignM(1) | FoldalignM(2) | MARNA | PMmulti | Stemloc | Â | Â | Â |
tRNA | 95 | 93 (98/98) | 94 (97/98) | 90 (91/98) | 79 (98/98) | 90 (89/98) | 88 (98/98) | Â | Â | Â |
Intron_gpII | 75 | 71 (89/92) | 70 (92/92) | 67 (89/92) | 76 (92/92) | 77 (61/92) | 77 (92/92) | Â | Â | Â |
5S_rRNA | 93 | 92 (89/89) | 92 (88/89) | 89 (89/89) | 58 (78/89) | 85 (89/89) | 72 (89/89) | Â | Â | Â |
U5 | 80 | 77 (109/109) | 72 (108/109) | 69 (107/109) | 85 (74/109) | 56 (105/109) | 64 (109/109) | Â | Â | Â |
SRP | 82 | 83 (84/93) | Â | Â | Â | Â | Â | Â | Â | Â |
Average(all) | 85 | 83 | Â | Â | Â | Â | Â | Â | Â | Â |
Average(sub) | 86 | 83 | 82 | 79 | 74 | 77 | 75 | Â | Â | Â |
MCC:Family | %id | length | MXSCARNA | Murlet | ProbCons | MAFFT | ClustalW | StrAl | RNASampler | RNAlara |
tRNA | 69 | 76 | 94 | 92 | 91 | 90 | 83 | 88 | 94 | 93 |
Intron_gpII | 64 | 80 | 82 | 80 | 77 | 76 | 74 | 74 | 80 | 79 |
5S_rRNA | 70 | 117 | 71 | 69 | 67 | 68 | 67 | 69 | 69 | 70 |
U5 | 72 | 118 | 80 | 75 | 70 | 66 | 66 | 69 | 77 | 72 |
SRP | 67 | 300 | 75 | 72 | 68 | 67 | 68 | 65 | 71 | 63 |
Average(all) | Â | Â | 80 | 78 | 75 | 73 | 72 | 73 | 78 | 76 |
Average(sub) | Â | Â | 82 | 79 | 76 | 75 | 72 | 75 | 80 | 79 |
MCC:Family | Locarna | FoldalignM(1) | FoldalignM(2) | MARNA | PMmulti | Stemloc | Â | Â | Â | Â |
tRNA | 92 | 96 | 92 | 80 | 93 | 93 | Â | Â | Â | Â |
Intron_gpII | 80 | 76 | 80 | 78 | 76 | 76 | Â | Â | Â | Â |
5S_rRNA | 71 | 72 | 71 | 59 | 70 | 68 | Â | Â | Â | Â |
U5 | 74 | 70 | 69 | 60 | 61 | 78 | Â | Â | Â | Â |
SRP | 73 | Â | Â | Â | Â | Â | Â | Â | Â | Â |
Average(all) | 78 | Â | Â | Â | Â | Â | Â | Â | Â | Â |
Average(sub) | 79 | 79 | 78 | 69 | 75 | 79 | Â | Â | Â | Â |