From: Prediction of TF target sites based on atomistic models of protein-DNA complexes
A) Fraction of interface binding score contributed by: | ||||
---|---|---|---|---|
H-bonds | Hydrophobic contacts | Water-mediated H-bonds | # atomic interactions | |
CRP | 1.00 | 0.00 | 0.00 | 8 |
PurR | 0.76 | 0.24 | 0.00 | 6 |
MetJ | 0.89 | 0.00 | 0.11 | 6 |
NarL | 0.61 | 0.34 | 0.05 | 11 |
LEU3 | 1.00 | 0.00 | 0.00 | 4 |
PHO4 | 1.00 | 0.00 | 0.00 | 7 |
RAP1 | 1.00 | 0.00 | 0.00 | 12 |
ZIF268 | 0.70 | 0.00 | 0.30 | 21 |
B) E -value of PWM derived from: | ||||
H-bonds | Hydrophobic contacts | Water-mediated H-bonds | All atomic interactions | |
NarL | 1.049E-02 | 4.837E-04 | - | 7.010E-07 |
ZIF268 | 1.359E-11 | - | 6.957E-05 | 1.998E-14 |