Figure 4
From: Detection of protein catalytic residues at high precision using local network properties
Visualisation of the catalytic and functional residues detected using our scoring function on two proteins from the validation set. Side-chains of residues predicted as catalytic (see Table 2) when using thresholds MDev1 and MDev2 are shown as sticks, with carbon atoms in green and orange, respectively. Bonds to iron are shown as solid lines. Left: Phenylalanine hydroxylase. Iron is shown as a red sphere and water in pink. Right: ferric-binding protein. Iron is shown as a red sphere and phosphorous in yellow.