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Table 2 Summary of the predicted S. cerevisiae ncRNA candidates

From: An efficient genetic algorithm for structural RNA pairwise alignment and its application to non-coding RNA discovery in yeast

  

S. cerevisiae

P cutoff

organism

int

orf

rna

0.90

S. mikatae

252 (27,760)

356 (40,529)

10 (786)

 

S. kudriavzevii

247 (28262)

423 (49,395)

9 (692)

 

S. bayanus

116 (12,230)

221 (26,143)

3 (279)

 

S. castellii

105 (12,537)

260 (30,009)

0 (0)

 

S. kluyveri

184 (18,904)

315 (36,471)

9 (460)

 

S. paradoxus

118 (12,493)

177 (22,219)

2 (200)

 

all

714 (102,652)

1,311 (197,116)

20 (2,267)

0.95

S. mikatae

83 (10,234)

108 (14,190)

3 (350)

 

S. kudriavzevii

76 (9,862)

121 (15,905)

2 (256)

 

S. bayanus

37 (4,692)

63 (8,109)

0 (0)

 

S. castellii

32 (3,886)

79 (10,532)

0 (0)

 

S. kluyveri

55 (6,566)

88 (11,564)

2 (210)

 

S. paradoxus

30 (3,497)

47 (6,286)

1 (150)

 

all

253 (37,128)

435 (64,974)

7 (966)

  1. The 'int', 'orf', and 'rna' columns indicate the number of ncRNA candidate regions for the S. cerevisiae intergenic, orf-coding, and known RNA sequences, respectively. In parenthesis, their total length (nt) is shown. The 'organism' column indicates the counterpart of each genome comparison. The 'all' rows are the summary for all genome comparisons after eliminating positional overlaps. Pcutoff is a cutoff value for the SVM classification probability. In this table, the results for Pcutoff = 0.9 and Pcutoff = 0.95 are shown.