Table 3 Data set SCL16. The data set SCL16 consists of SCL16L and SCL16T as the learning data set and testing data set, respectively. There are 15 essential GO terms corresponding to eukaryotic subcellular compartments. Note that GO:0005814 is not appeared in the set of n = 2870 GO terms. The number t of (t) in SCL16L represents the number of sequences which are correctly annotated by only one essential GO term.
Label | Compartment | Essential | Number of sequences | |
|---|---|---|---|---|
| Â | Â | GO term | SCL16L | SCL16T |
1 | Centriole | GO:0005814 | 17 (0) | 4 |
2 | Cytoplasm | GO:0005737 | 384 (92) | 334 |
3 | Cytoskeleton | GO:0005856 | 20 (7) | 5 |
4 | Endoplasmic reticulum | GO:0005783 | 91 (83) | 22 |
5 | Extracellular | GO:0030198 | 402 (1) | 404 |
6 | Golgi apparatus | GO:0005794 | 68 (8) | 17 |
7 | Lysosome | GO:0005764 | 37 (32) | 9 |
8 | Chloroplast | GO:0009507 | 207 (192) | 51 |
9 | Mitochondrion | GO:0005739 | 183 (173) | 45 |
10 | Nucleus | GO:0005634 | 474 (395) | 695 |
11 | Peroxisome | GO:0005777 | 52 (38) | 12 |
12 | Plasma membrane | GO:0005886 | 323 (29) | 90 |
13 | Cell wall | GO:0005618 | 20 (16) | 5 |
14 | Cyanelle | GO:0009842 | 78 (65) | 19 |
15 | Vacuole | GO:0005773 | 36 (30) | 8 |
1 6 | Plastid | GO:0009536 | 31 (1) | 7 |
Total | Â | Â | 2423 (1162) | 1727 |