Table 1 Structural rules employed for the extraction of sequence record properties from GenBank and GenPept. For each structural rule, the priority (lower numbers indicate higher priority) and XPath expression are given. The proteinName property was only extracted from GenPept.
From: Rule-based knowledge aggregation for large-scale protein sequence analysis of influenza A viruses
Property | Priority | Xpath expression |
|---|---|---|
proteinName | 1 | /GBSeq/GBSeq_definition |
2 | /GBSeq/GBSeq_feature-table/GBFeature/GBFeature_quals/GBQualifier [GBQualifier_name='gene']/GBQualifier_value | |
subtype | 1 | /GBSeq/GBSeq_feature-table/GBFeature/GBFeature_quals/GBQualifier [GBQualifier_name='strain']/GBQualifier_value |
2 | /GBSeq/GBSeq_feature-table/GBFeature/GBFeature_quals/GBQualifier [GBQualifier_name='isolate']/GBQualifier_value | |
3 | /GBSeq/GBSeq_feature-table/GBFeature/GBFeature_quals/GBQualifier [GBQualifier_name='organism']/GBQualifier_value | |
isolate | 1 | /GBSeq/GBSeq_feature-table/GBFeature/GBFeature_quals/GBQualifier [GBQualifier_name='strain']/GBQualifier_value |
2 | /GBSeq/GBSeq_feature-table/GBFeature/GBFeature_quals/GBQualifier [GBQualifier_name='isolate']/GBQualifier_value | |
3 | /GBSeq/GBSeq_feature-table/GBFeature/GBFeature_quals/GBQualifier [GBQualifier_name='organism']/GBQualifier_value | |
host | 1 | /GBSeq/GBSeq_feature-table/GBFeature/GBFeature_quals/GBQualifier [GBQualifier_name='specific_host']/GBQualifier_value |
2 | /GBSeq/GBSeq_feature-table/GBFeature/GBFeature_quals/GBQualifier [GBQualifier_name='strain']/GBQualifier_value | |
3 | /GBSeq/GBSeq_feature-table/GBFeature/GBFeature_quals/GBQualifier [GBQualifier_name='isolate']/GBQualifier_value | |
4 | /GBSeq/GBSeq_feature-table/GBFeature/GBFeature_quals/GBQualifier [GBQualifier_name='organism']/GBQualifier_value | |
origin | 1 | /GBSeq/GBSeq_feature-table/GBFeature/GBFeature_quals/GBQualifier [GBQualifier_name='country']/GBQualifier_value |
2 | /GBSeq/GBSeq_feature-table/GBFeature/GBFeature_quals/GBQualifier [GBQualifier_name='isolation_source']/GBQualifier_value | |
3 | /GBSeq/GBSeq_feature-table/GBFeature/GBFeature_quals/GBQualifier [GBQualifier_name='strain']/GBQualifier_value | |
4 | /GBSeq/GBSeq_feature-table/GBFeature/GBFeature_quals/GBQualifier [GBQualifier_name='isolate']/GBQualifier_value | |
5 | /GBSeq/GBSeq_feature-table/GBFeature/GBFeature_quals/GBQualifier [GBQualifier_name='organism']/GBQualifier_value | |
6 | /GBSeq/GBSeq_references/GBReference/GBReference_title | |
year | 1 | /GBSeq/GBSeq_feature-table/GBFeature/GBFeature_quals/GBQualifier [GBQualifier_name='note']/GBQualifier_value |
2 | /GBSeq/GBSeq_feature-table/GBFeature/GBFeature_quals/GBQualifier [GBQualifier_name='isolation_source']/GBQualifier_value | |
3 | /GBSeq/GBSeq_feature-table/GBFeature/GBFeature_quals/GBQualifier [GBQualifier_name='strain']/GBQualifier_value | |
4 | /GBSeq/GBSeq_feature-table/GBFeature/GBFeature_quals/GBQualifier [GBQualifier_name='isolate']/GBQualifier_value | |
5 | /GBSeq/GBSeq_feature-table/GBFeature/GBFeature_quals/GBQualifier [GBQualifier_name='organism']/GBQualifier_value |