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Table 4 Accuracy of data sets generated along a 24 taxa tree (JC and HKY models).

From: Is plant mitochondrial RNA editing a source of phylogenetic incongruence? An answer from in silico and in vivo data sets

24 taxa tree - JC model

% editing

0

1

3

5

7

10

1,000 nucleotides

      

Genomic

1

0.92

0.86

0.88*

0.80*

0.79*

cDNA

1

0.88

0.82

0.77

0.64

0.58

Control

1

0.95

0.88

0.91

0.90

0.86

24 taxa tree – HKY model

% editing

0

1

3

5

7

10

1,000 nucleotides

      

Genomic

1

0.94

0.94

0.91*

0.90*

0.90*

cDNA

1

0.93

0.92

0.83

0.78

0.73

Control

1

0.94

0.90

0.87

0.81

0.70

  1. * indicates that the comparison between genomic and cDNA accuracy is significant (Pχ21< 0.05)
Accuracy of ML inferred trees from data sets of 1,000 bp generated along a 24 taxa tree and under a growing percentage of editing positions. Background sites evolved according both JC and HKY models [17, 18]. Results from multiple alignments without editing sites are also shown as control.
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BMC Bioinformatics

ISSN: 1471-2105

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