From: histoneHMM: Differential analysis of histone modifications with broad genomic footprints
Data | Replicate | Total number | Mapped |
---|---|---|---|
 |  | of reads | reads |
H3K27me3 BN | 1 | 69,047,384 | 54,415,680 |
H3K27me3 BN | 2 | 82,631,022 | 70,349,074 |
H3K27me3 BN | 3 | 70,920,377 | 60,263,098 |
H3K27me3 SHR | 1 | 62,894,736 | 49,966,171 |
H3K27me3 SHR | 2 | 68,439,111 | 58,495,532 |
H3K27me3 SHR | 3 | 68,419,655 | 58,433,557 |
Input BN | 1 | 14,104,386 | 12,833,263 |
Input BN | 2 | 15,381,807 | 14,172,254 |
Input BN | 3 | 61,276,324 | 58,969,661 |
Input SHR | 1 | 16,049,419 | 14,700,053 |
Input SHR | 2 | 18,586,414 | 16,910,655 |
Input SHR | 3 | 74,035,329 | 70,234,582 |
RNA-seq BN | 1 | 168,796,774 | 121,417,255 |
RNA-seq BN | 2 | 162,380,800 | 123,606,276 |
RNA-seq BN | 3 | 170,100,328 | 129,078,242 |
RNA-seq BN | 4 | 161,444,260 | 117,512,826 |
RNA-seq BN | 5 | 144,182,176 | 105,095,363 |
RNA-seq SHR | 1 | 164,552,150 | 118,500,162 |
RNA-seq SHR | 2 | 166,005,952 | 126,920,455 |
RNA-seq SHR | 3 | 149,525,162 | 108,870,073 |
RNA-seq SHR | 4 | 120,844,554 | 85,337,460 |
RNA-seq SHR | 5 | 138,124,004 | 99,015,155 |
H3K9me3 female | 1 | 13,306,841 | 8,708,647 |
H3K9me3 female | 2 | 7,860,660 | 3,942,578 |
H3K9me3 female | 3 | 7,092,019 | 3,553,617 |
H3K9me3 male | 1 | 12,091,621 | 6,274,126 |
H3K9me3 male | 2 | 7,195,641 | 3,514,546 |
H3K9me3 male | 3 | 5,703,768 | 2,786,109 |
Input | 1 | 10,458,196 | 6,714,959 |
Input | 2 | 4,304,875 | 1,940,625 |
Input | 3 | 3,586,754 | 1,559,414 |
Input | 4 | 4,482,286 | 1,947,833 |
Input | 5 | 3,680,479 | 1,535,794 |
Input | 6 | 14,922,773 | 11,291,654 |
RNA-seq female | 1 | 6,245,431 | 4,367,593 |
RNA-seq female | 2 | 13,093,629 | 9,257,763 |
RNA-seq male | 1 | 14,086,627 | 11,311,584 |
RNA-seq male | 2 | 8,098,083 | 6,476,421 |
MB H3K27me3 | 1 | 9,453,468 | 9,421,380 |
MB H3K27me3 | 2 | 9,924,308 | 9,875,240 |
MB H3K27me3 | 3 | 10,316,946 | 10,262,585 |
MB input | 1 | 9,798,009 | 9,780,084 |
MB input | 2 | 9,807,040 | 9,789,125 |
MB input | 3 | 7,351,896 | 7,340,980 |
MB input | 4 | 12,350,738 | 12,324,079 |
H1 H3K09me3 | 1 | 32,382,686 | 22,900,208 |
H1 H3K09me3 | 2 | 41,645,083 | 27,715,874 |
H1 H3K27me3 | 1 | 8,342,672 | 6,434,801 |
H1 H3K27me3 | 2 | 15,963,714 | 12,146,581 |
H1 H3K27me3 | 3 | 19,825,041 | 10,943,029 |
H1 H3K27me3 | 4 | 17,600,144 | 5,009,090 |
H1 H3K27me3 | 5 | 11,715,209 | 7,194,836 |
H1 H3K27me3 | 6 | 14,948,211 | 8,705,091 |
H1 H3K27me3 | 7 | 13,277,331 | 5,472,352 |
H1 H3K36me3 | 1 | 24,086,746 | 13,669,344 |
H1 H3K36me3 | 2 | 16,739,261 | 13,164,807 |
H1 H3K79me2 | 1 | 29,740,715 | 24,616,670 |
H1 H3K79me2 | 2 | 45,788,899 | 35,599,680 |
H1 input | 1 | 13,876,810 | 10,813,095 |
H1 input | 2 | 16,581,567 | 7,681,001 |
H1 RNA-seq | 1 | 250,790,392 | 140,719,829 |
H1 RNA-seq | 2 | 214,202,680 | 114,403,031 |
K562 H3K27me3 | 1 | 19,297,190 | 12,210,065 |
K562 H3K27me3 | 2 | 22,830,589 | 12,119,288 |
K562 H3K36me3 | 1 | 26,973,698 | 14,803,144 |
K562 H3K36me3 | 2 | 17,501,267 | 10,393,298 |
K562 H3K79me2 | 1 | 31,690,813 | 22,740,997 |
K562 H3K79me2 | 2 | 21,245,046 | 13,669,674 |
K562 H3K9me3 | 1 | 21,099,652 | 15,816,227 |
K562 H3K9me3 | 2 | 46,226,003 | 33,939,687 |
K562 input | 1 | 27,579,809 | 19,570,350 |
K562 RNA-seq | 1 | 227,177,516 | 134,666,953 |
K562 RNA-seq | 2 | 238,106,630 | 158,075,847 |