From: Cell-composition effects in the analysis of DNA methylation array data: a mathematical perspective
Abbrev | Description or KEGG pathway | Total # of CpGs | |||
---|---|---|---|---|---|
27K (all) | 27K (auto) | 450K (pass) | |||
 | Total CpGs included in analyses | 27578 | 26,486 | 319,264 | |
DMR | 500 previously published leukocyte DMRs [27K] [18] or overlap with 600 previously published leukocyte DMRs [450K] [46] | 500 | 500 | 417 | |
PcG | 3614 | 3523 | 41,942 | ||
Apoptosis | 04210 | Apoptosis | 157 | 149 | 1126 |
Bcell | 04662 | B cell receptor signaling pathway | 138 | 136 | 1168 |
CardiacM | 04260 | Cardiac muscle contraction | 121 | 116 | 967 |
CellCycle | 04110 | Cell cycle | 250 | 245 | 2028 |
CyCy | 04060 | Cytokine-cytokine receptor interaction | 437 | 426 | 2088 |
DorsoV | 04320 | Dorso-ventral axis formation | 38 | 38 | 565 |
ErbB | 04012 | ErbB signaling pathway | 154 | 148 | 1470 |
Hemato | 04640 | Hematopoietic cell lineage | 153 | 152 | 779 |
HepC | 05160 | Hepatitis C | 209 | 205 | 1536 |
Hhog | 04340 | Hedgehog signaling pathway | 92 | 90 | 1090 |
JakStat | 04630 | Jak-STAT signaling pathway | 254 | 250 | 1579 |
MAPK | 04010 | MAPK signaling pathway | 469 | 457 | 4535 |
mTOR | 04150 | mTOR signaling pathway | 92 | 88 | 1117 |
NK | 04650 | Natural killer cell mediated cytotoxicity | 219 | 215 | 1530 |
Notch | 04330 | Notch signaling pathway | 67 | 67 | 1097 |
p53 | 04115 | p53 signaling pathway | 144 | 142 | 1034 |
Tcell | 04660 | T cell receptor signaling pathway | 191 | 187 | 1568 |
TGF | 04350 | TGF-beta signaling pathway | 154 | 154 | 1314 |
VascSm | 04270 | Vascular smooth muscle contraction | 193 | 189 | 1903 |
VEGF | 04370 | VEGF signaling pathway | 131 | 131 | 1104 |