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Fig. 1 | BMC Bioinformatics

Fig. 1

From: affy2sv: an R package to pre-process Affymetrix CytoScan HD and 750K arrays for SNP, CNV, inversion and mosaicism calling

Fig. 1

Schema of the application of affy2sv to analyze CytoScan data. Part A of the figure shows the work-flows available in the R package affy2sv. These work-flows are composed by two steps: generate intermediate files and generate specific output. First step us done using the function Cyto2APT. The seconds step is done using the functions Cyto2Mad and Cyto2SnpMatrix. Part B of the figure shows the pipelines used to perform the two studies detailed in the article. The two CytoScan HD populations were pre-process using affy2sv and then analyzed using different tools

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BMC Bioinformatics

ISSN: 1471-2105

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