Table 1 Dataset information. From left to right: Type of comparison for which the sequence is going to be used, species name, strand and/or chromosome of origin, GenBank accession number and size in Mbp
From: Breaking the computational barriers of pairwise genome comparison
Test type | Species | Strain / Chromosome | Accession number | Mbp |
|---|---|---|---|---|
Pairwise comparison | Tomato Yellow Leaf Curl Virus | TYLCV | GenBank:AM409201.1 | 0.004 |
| Â | Tomato Yellow Leaf Curl Virus | TYLCV-lr2 | GenBank:EU085423.2 | 0.004 |
| Â | Buchnera aphidicola | APS (Acyrthosiphon pisum) | GenBank:NC_002528.1 | 0.636 |
| Â | Buchnera aphidicola | 5A (Acyrthosiphon pisum) | GenBank:NC_011833.1 | 0.640 |
| Â | Escherichia coli | K-12 | GenBank:NC_000913.2 | 4.596 |
| Â | Escherichia coli | O157:H7 Sakai | GenBank:NC_002695.1 | 5.448 |
| Â | Drosophila melanogaster | chromosome 2R | GenBank:NT_033778.3 | 20.948 |
|  | Drosophila pseudoobscura | strain MV2–25 chromsome 3 | GenBank:NC_009006.2 | 19.604 |
Multiple comparison | Homo sapiens | chromosome 1 | GenBank:NC_000001.11 | 246.600 |
| Â | Pan troglodytes | chromosome 1 | GenBank:NC_006468.3 | 226.172 |
| Â | Macaca mulata | chromosome 1 | GenBank:NC_007858.1 | 226.092 |
| Â | Pongo abelii | chromosome 1 | GenBank:NC_012591.1 | 227.768 |
| Â | Gorilla gorilla | chromosome 1 | GenBank:NC_018424.1 | 227.336 |
| Â | Mus musculus | chromosome 1 | GenBank:NC_000067.6 | 193.624 |
| Â | Rattus norvegicus | chromosome 1 | GenBank:NC_005100.3 | 287.344 |
| Â | Bos taurus breed Hereford | chromosome 1 | GenBank:AC_000158.1 | 156.840 |
| Â | Canis lupus familiaris breed Boxer | chromosome 1 | GenBank:NC_006583.3 | 121.516 |
| Â | Sus scrofa breed mixed | chromosome 1 | GenBank:NC_010443.4 | 312.336 |