Fig. 4

Multiple alignment view. a Left column contains various details about the alignment. b Aligned structures are visualized using JSmol. c The color and scheme of the visualization can be changed. d Aligned GSSU pairs can be displayed and either cycled by clicking left/right arrows or selected from a drop-down box. e The visualization of aligned residues can be turned on or off. f Nearest neighbor nucleotides lying within a user adjustable distance range can be highlighted. g Results of other pairwise alignments are displayed as vertically stacked boxes